Rubrivivax benzoatilyticus: RBXJA2T_15548
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Entry
RBXJA2T_15548 CDS
T04092
Name
(GenBank) formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rbn
Rubrivivax benzoatilyticus
Pathway
rbn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rbn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RBXJA2T_15548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rbn03400
]
RBXJA2T_15548
Enzymes [BR:
rbn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
RBXJA2T_15548
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
RBXJA2T_15548
DNA repair and recombination proteins [BR:
rbn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RBXJA2T_15548
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
DUF7573
Zn_ribbon_IS1595
Zn_ribbon_6
Zn_Ribbon_TF
Zn_ribbon_8
Motif
Other DBs
NCBI-ProteinID:
EGJ11751
LinkDB
All DBs
AA seq
274 aa
AA seq
DB search
MPELPEVEVTRRGIDEPLRGAEVLAVRLGKALRWPLGVAPQALLGARVLPVQRRGKYLWL
PLLGGCGGGLLLHLGMSGSLALHPAAPAPGPHDHFDLVTSHGTLRLTDPRRFGAVVWSPS
TADPPAATLLAALGAEPFDATLTPQSFHAALQRHRTPIKAMLLSGRIVVGAGNIYACEAL
HQAGIHPATPCRRIGPLRAARLLQALRETLAQAIELGGSTLRDFRDAHGMNGEFQHHARV
YGRAGEPCPRCGAAVRRVVQAQRATYFCAACQRP
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaattgcccgaagtcgaagtcacgcgcaggggcatcgacgagccgctgcgtggt
gccgaggtcttggcggtgcgcctgggcaaggccttgcgctggccgctgggcgtcgcgccg
caggccctgctcggcgcccgcgtgctgccggtgcagcggcgcggcaagtacctctggctg
ccgctgctcggcggctgcggcggcgggctgctgctgcacctgggcatgtccggctcgctg
gcgctgcacccggccgcgccggcgcccggcccgcacgaccacttcgacctcgtcacctcg
cacggcacgctgcgcctgaccgacccacggcgcttcggtgccgtcgtctggtcgccgtcc
accgccgacccgccggcggcgacgctgctggccgcgctcggcgccgagccgtttgacgcc
acgctcacgccgcagtccttccatgccgcgctgcagcgccatcgcacgccgatcaaggcg
atgctgctgtccgggcgcatcgtcgtcggcgccggcaacatctacgcctgcgaggcgctg
catcaggccggcatccacccggcgacgccgtgccggcgcatcggcccgctgcgtgcggcg
cggctgctgcaggcgctgcgcgagacgctggcgcaggcgatcgagctgggcggctcgacg
ctgcgcgacttccgcgatgcccacggcatgaacggcgagttccagcaccatgcccgggtc
tacggccgtgccggcgaaccctgcccgcgctgcggcgccgcggtgcggcgtgtcgtgcag
gcgcagcgcgccacctatttctgcgccgcctgccagcgtccctga
DBGET
integrated database retrieval system
