Rahnella bonaserana: QNM34_02340
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Entry
QNM34_02340 CDS
T09076
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rbon
Rahnella bonaserana
Pathway
rbon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QNM34_02340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbon03019
]
QNM34_02340
03009 Ribosome biogenesis [BR:
rbon03009
]
QNM34_02340
Enzymes [BR:
rbon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QNM34_02340
Messenger RNA biogenesis [BR:
rbon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QNM34_02340
Ribosome biogenesis [BR:
rbon03009
]
Prokaryotic type
rRNA helicases
QNM34_02340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
Cas3-like_C_2
UTP25_NTPase-like
AAA_19
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WHZ41169
LinkDB
All DBs
Position
510419..512341
Genome browser
AA seq
640 aa
AA seq
DB search
MTTELETSFADLGLSAPIISALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAA
FSLPLLHNIDASLKAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQL
RALRQGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPA
EHQTALFSATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWSVYGLRKNEALVRF
LEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDIL
IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
IERTMKLTIPEVEIPTAEVLGERRLAKFAAKVQQQLESSDLDQYRGLLAKLQPAEELDIE
TLAAALLKMAQGERPLIVAADPVFKSRPPRREFEDRGDRGDRGDRRDRPVRSNDRPARDG
DSPRRERRDAGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIEL
PKGMPGEILSHFTRTRILNKPMNMQLIGDAVPQAPRRDRPAGAGGERRGNGAPRPFNGER
REGGRGNGAPRSFSGDRREGSSAAGDRRPPSRAPRRTTDA
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgactactgagcttgaaacctcttttgctgacctggggctgtctgctccgatcatttct
gccctgactgatttgggctacgaaaaaccttcaccaatccaggctgagtgtattcctcac
ctgttaaatggccgcgacgttctgggtatggctcagacaggttccggtaaaacagcagca
ttctctttaccactgctgcacaacattgatgcttcactgaaagcaccacaaattcttgtt
ctggcaccaacccgcgaactggcggttcaggttgctgaagcaatgactgatttctctaaa
cacatgcatggcgtgaatgtggttgctctttacggcggccagcgctatgacgttcagctg
cgcgcactgcgtcagggaccacaagttgttgtgggtaccccgggccgtctgctggaccac
ctgaaacgcggcaccctgaacctctctaacctgagcggtctggtgctggacgaagctgat
gaaatgctgcgtatgggcttcatcgaagacgtcgaaactatcatggctcagatcccggct
gaacatcagaccgcgttgttctctgcaaccatgccagaagccatccgtcgtattacccgt
cgcttcatgaaagatcctcaggaagtacgtatccagtcaagcgtgactacccgtccagac
atcagccagagctactggtctgtctacggtctgcgtaaaaacgaagcgctggtgcgtttc
cttgaagcagaagattttgatgcggcgattatcttcgttcgtaccaaaaatgcgacactg
gaagtggctgaagctctggaacgtagtggctacagcagcgctgcactgaacggtgacatg
aaccaggcgctgcgtgagcagactctggaacgtctgaaagatggccgtctggacattctg
atcgcaactgacgtggcagcacgtggtctcgatgtagaacgtatcagcctggtggttaac
tacgacattccgatggactcagaatcatacgttcaccgtatcggtcgtaccggtcgtgct
ggccgtgcgggtcgcgcattactgttcgttgagaaccgtgagcgtcgtctgctgcgtaac
attgaacgcaccatgaagctgaccattccagaagttgaaatcccaactgcagaagttctg
ggcgaacgtcgtctggctaaattcgcagcgaaagttcagcaacaactggaaagcagcgat
ctggatcaataccgtggtctgctggcgaaactgcaacctgcagaagagctggacatcgaa
acactggctgcggcattgctgaaaatggcacagggcgaacgtcctctgatcgttgcagcg
gatccggtcttcaaaagccgtccaccacgtcgtgaattcgaagatcgtggtgaccgcggt
gatcgtggcgatcgtcgtgaccgtccggttcgcagcaacgaccgtcctgcacgtgatggc
gacagcccacgtcgtgaacgtcgtgacgcgggcgaaatggaactgtatcgcatcgaagtg
ggtcgtgatgatggtgttgaagttcgtcacatcgttggcgctatcgctaacgaaggcgac
atcagcagccgttatatcggtaacatcaagctgttcggtacgcactcaactatcgaattg
cctaaaggtatgccgggcgagatcctgtctcacttcacccgtacgcgtatcctgaacaaa
ccgatgaacatgcagctgatcggtgatgcagtgccacaggctccgcgtcgtgatcgtccg
gctggtgcaggcggtgagcgtcgtggtaacggtgctccgcgtcctttcaacggtgaacgt
cgtgaaggtggccgtggtaacggtgctccacgttctttcagcggtgatcgtcgtgaaggt
tcttcagcagctggcgaccgtcgtccgccaagccgcgcaccacgtcgtactactgacgca
taa
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