Rahnella bonaserana: QNM34_02960
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Entry
QNM34_02960 CDS
T09076
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
rbon
Rahnella bonaserana
Brite
KEGG Orthology (KO) [BR:
rbon00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rbon03009
]
QNM34_02960 (rlmD)
Enzymes [BR:
rbon01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
QNM34_02960 (rlmD)
Ribosome biogenesis [BR:
rbon03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
QNM34_02960 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
PCMT
Methyltransf_25
RrnaAD
MTS
TRM5-TYW2_MTfase
Methyltransf_11
Cons_hypoth95
Methyltransf_23
Methyltransf_ANTKMT
Methyltransf_4
Methyltransf_15
CMAS
Ribosomal_L22
Methyltr_RsmB-F
Ubie_methyltran
FtsJ
DOT1
Motif
Other DBs
NCBI-ProteinID:
WHZ41280
LinkDB
All DBs
Position
663150..664520
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AA seq
456 aa
AA seq
DB search
MAQFYSPNRRVTTRQTITVTATDLDAFGQGVARHNGKAVFVSGLLPGEQAEVTLTEDKSK
YAKGRLKRLLTTSADRVKPVCPHYSVCGGCQQQHASEALQQSSKSASLLRLIARETGVQA
DPQPVIAGPQYGYRRRARLGLQIAGVKPGRKTGTANGPLVMGFRQEGSNDLVAITKCPVL
RPELEQLLVPVQECLSSLSAAKRLGHLELVLADNGPLLVLRHLDPLSEADRARLTAFAAQ
HQLTIFLAPDSDTLERLCGETPYYQIDGLNLKFGPRDFIQVNDAVNQQMVAQALQWLELK
PEDRVLDLFCGMGNFTLPLAKRATQVVGVEGVATLVANGQDNARNNGLENASFFHENLED
DVSKQPWAAQGFNKILLDPARGGAAGVMAHIVKLAPARVVYVSCNPTTLARDSKILLEAG
YRLAQVRMLDMFPHTGHLESMALFINPSDTGVVSET
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atggctcaattctactctccgaaccgccgcgtgacgacccggcaaacgataactgtgacc
gcaaccgaccttgatgctttcgggcagggtgtcgcacgtcacaacggcaaagccgtgttt
gtcagtggtttactgcccggtgaacaggcagaagtcactttaacagaagataaaagtaag
tacgccaaagggcggctgaaacgtttgctgaccaccagcgcggatcgtgtgaaaccggtt
tgtccgcactattcggtctgcggcggttgccagcaacagcacgccagtgaggcgctgcaa
cagagcagcaaatcggcgtcactgttgcgcctgattgcacgcgaaaccggagttcaggcg
gatcctcagccggtgattgccggtccgcaatacggctaccgccgtcgcgcgcgtctggga
ttgcaaattgcgggcgttaaaccggggcgtaaaaccggaacggcgaacggtccgctggtg
atggggttccgtcaggaaggttcaaacgatctggttgccatcacaaaatgcccggttttg
cgtcctgaactggaacaactgctggtgccggtgcaggaatgcctgtcgtcgttgtcggca
gcaaaacgtctcggacatctggaactggtgctggcggataacggtccgctgctggtgctg
cgccaccttgatccgctcagtgaagccgatcgcgcgcgcctgaccgcgtttgccgcgcaa
catcagctgacgattttcctggcacctgacagcgatacgctggagcgcttatgcggtgaa
acgccttattatcagattgatggtctgaatctgaaatttggtccgcgcgattttattcag
gtgaatgacgcagttaaccagcaaatggtggcgcaggccttgcaatggctggaactgaag
cctgaggatcgtgtgctggatttgttctgcgggatggggaatttcactctgccactggca
aaaagagctacgcaggttgtcggcgtcgaaggtgttgctacactggtggcgaatgggcaa
gataatgcccggaataatggattagaaaatgcctctttcttccacgaaaatctggaagat
gatgtcagtaaacaaccctgggcagcgcaaggcttcaataaaatcttgctggatccggcc
cggggcggcgctgctggcgtgatggcgcatatcgttaagcttgccccggcgcgtgtggtg
tatgtgtcatgcaaccccacaacattggcgcgggacagtaaaattttgttggaggcgggt
tatcgtttagctcaggtgcgtatgttggatatgttcccgcacaccgggcaccttgaatcg
atggctctgtttatcaacccgtctgacacaggcgttgtgtcagaaacgtag
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