Rahnella bonaserana: QNM34_04485
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Entry
QNM34_04485 CDS
T09076
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rbon
Rahnella bonaserana
Pathway
rbon03030
DNA replication
rbon03430
Mismatch repair
rbon03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rbon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QNM34_04485 (dnaE)
03430 Mismatch repair
QNM34_04485 (dnaE)
03440 Homologous recombination
QNM34_04485 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rbon03032
]
QNM34_04485 (dnaE)
03400 DNA repair and recombination proteins [BR:
rbon03400
]
QNM34_04485 (dnaE)
Enzymes [BR:
rbon01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
QNM34_04485 (dnaE)
DNA replication proteins [BR:
rbon03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
QNM34_04485 (dnaE)
DNA repair and recombination proteins [BR:
rbon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
QNM34_04485 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
WHZ41554
LinkDB
All DBs
Position
986849..990331
Genome browser
AA seq
1160 aa
AA seq
DB search
MAEPRFIHLRVHSDYSMVDGLAKVGPLVKCAASLGMPALAITDFTNLCGLVKFYGAAHGA
GIKPIIGADLNVQSEILGDELAQLTVLAMNNQGYQNLTLLISRAYQRGYGAAGPIVDLQW
LAELNEGLILLSGARMGDVGKFLIRGNDLQVNQCLDFYQQYFPDRYYLELIRTGRPEEEN
YLHGAVALATERGLPVVATNDVRFMVPTDFDAHEIRVAIHDGFTLDDPKRPRNYTSQQYM
RSEDEMCELFEDVPEALQNSVEIAKRCNVTIRLGEYFLPQFPTGDMTTEDFLVEKSKIGL
EERLEFLFPDPEVRAQRRPEYDERLDIELKVINQMGFPGYFLIVMEFIQWSKDNSVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDRVIDHVSE
MYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFAAEPQ
LPEIYEADEEVKSLIDMARQLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALAMINARREKAGEPPLDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDSFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDIQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYSLGGADMLRRAMGKKNPVEM
AKQRGGFEDGAKSRGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIKG
VGEGPIEAIIEARNEGGYFKELFDLCARADVKKLNKRILEKLIMSGAFDRLGPHRAALMS
SLPDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEKSYANVMPWPEQTVLDGERETLGLY
LTGHPITQYLKEIERYGGGQRLKDMHPTERGKMTVAVGLVLAARVMVTKRGNRIGICTLD
DRSGRLEVMLFTEALEKFQHLLEKDRILIATGQVSFDDFSGGLKMMARDVMDISEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRENARARLRFGASWRVTPTD
KLLLDLRGLVGSEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggccgaacctcgttttattcatctgcgtgtacatagcgactattccatggtggatggg
ctcgcgaaagtgggcccgcttgtgaaatgcgcagcgtcactcggcatgcccgctctggcg
attaccgatttcaccaacctttgcggactggtgaaattttatggtgctgctcacggtgcc
ggtattaaaccgattatcggtgcagacctgaatgtgcagagtgaaatcctcggggatgag
ctggctcagctgaccgttctggcgatgaataatcagggctatcaaaatctgacgctgctc
atctccagagcttaccagcgcggttatggcgcagccggaccgattgtcgacctccaatgg
ctggcggagctgaacgaaggcctgatcctgctctccggcgcgagaatgggcgacgtcggt
aagttcctgatccgcggcaatgatttgcaggtcaatcagtgtctcgatttctaccagcag
tatttccctgaccgctattacctcgaattaatccgcaccggtcgtccggaagaagagaac
tatcttcatggtgccgttgcgctggcgacagaacgtggtctgccagtcgtggccaccaac
gacgtacgttttatggtaccgaccgacttcgatgcccatgaaatccgcgttgctatccac
gacggttttactctcgacgaccctaaacgcccgcgtaattatacttcgcagcaatacatg
cgcagtgaagacgaaatgtgcgagctgtttgaagatgttcccgaagcgctgcaaaatagc
gtggaaatcgccaaacgctgtaacgtgaccatccgactgggcgaatatttcctgccccag
ttcccgaccggtgatatgaccacggaagacttcctggtcgaaaaatcaaaaatcggtctg
gaagaacgcctcgagtttttattcccggatcctgaagtgcgtgctcagcgacgtcctgaa
tacgacgaacgtctggatatcgaacttaaagtgatcaaccagatgggattccccggatac
ttcctgatcgttatggaattcatccagtggtcgaaagataacagcgtgccggttggtccc
ggtcgtggttccggtgccggttctctggtggcgtatgcgctgaaaattaccgatctggat
ccccttgagtttgacctgctcttcgaacgtttccttaaccctgaacgtgtttccatgccc
gactttgacgtcgacttctgtatggagaaacgcgaccgggttatcgatcacgtttctgaa
atgtacggtcgtgaagccgtttcgcagatcatcactttcggtacgatggctgccaaagcg
gttatccgcgatgtgggacgcgtcctcggtcatccttacggctttgttgatcgcatttca
aaactggtgccacctgatccggggatgacactggaaaaagcgtttgccgcagaacctcag
ttgccagaaatttatgaggctgatgaagaggttaaatcgctgattgacatggcccgtcag
ctggaaggtgtcacccgtaacgccggtaaacacgctggtggggtggtcatcgcgccaacc
aaaattaccgatttcgcgccgttatattgcgatgctgaaggtaaccatccggttactcag
ttcgataaaaacgacgttgaatatgccgggctggtcaagtttgacttcctcggtctgcgc
acgctgaccatcatcgactgggcgctggcaatgattaacgcccgccgcgagaaagccggt
gagccgccgctggacattgcggctatcccgctcgatgacaagaaaagcttcgacatgctg
caacgctcggaaaccacggcggtattccagcttgaatcgcgcggtatgaaagatttgatc
aaacgactgaagccagacagcttcgaagatatgatcgcactggtggcgctgttccgtccg
gggcctttgcagtccggcatggtagataattttatcgaccgtaaacacgggcgcgaagag
atttcttatccagatattcagtggcagcatgaatccctgaaacctgtactggagccgact
tatggcatcatcctgtaccaggaacaggtcatgcagattgcgcaggttctggcgggttat
tcgctgggtggcgcagacatgcttcgtcgtgcgatgggtaagaaaaacccggttgaaatg
gccaagcagcgtggcggctttgaagatggtgccaaatctcgcggcattgacggcgaactg
gcgattaaaatcttcgacctggtagagaaattcgccggttatggatttaacaaatctcac
tccgcagcttatgctttagtgtcgtatcagacgctgtggcttaaagcgcactatccggca
gaattcatggcggcggtaatgaccgcggatatggataacaccgagaaagtggtcgggttg
gtcgatgaatgctggcgtatggggctgaagattctgccgcctgatatcaacagcggtttg
taccatttccacgtgaacgacgaaggtgaaattgtctacggtattggcgccatcaaaggc
gtgggcgaaggcccgattgaagccattattgaagcgcgtaacgaaggcggctatttcaaa
gagttgtttgatctctgcgcgcgcgctgatgttaaaaaactgaataaacgcattctcgaa
aaactgatcatgtccggtgcctttgaccgcctcgggccacaccgtgctgcgctgatgagc
tctctgccggacgcactcaaagcggcggatcagcatgctaaagctgaagcgattggtcag
gtggatatgtttggtgttctggcagaagcgccggaacaggtcgaaaaatcttacgctaac
gtgatgccgtggccggaacaaacggtgctggatggtgagcgcgagacgcttgggctgtat
ctgaccggccatccgatcacacagtatctgaaagaaatcgagcgttatggcggcggccag
cgcctgaaagatatgcacccgacggaacggggcaaaatgaccgtcgcagtgggactggtg
cttgctgcacgtgtcatggtcaccaagcgcggtaaccgcattgggatctgtacactggat
gaccgctcaggtcgtctggaagtcatgttgttcaccgaagcattggaaaaatttcagcat
ttattggaaaaagaccgtatccttatcgccacaggacaggtcagctttgatgacttcagt
ggcgggcttaaaatgatggcccgcgatgtaatggacatcagtgaagcacgggaaaaatat
gctcgcggtcttgctatatcgctgactgacaggcaaattgatgaccagcttttgaaccgt
ctccgccaatcgttggaacctcatcgatcggggacgataccagtgcatctgtattaccaa
cgagaaaacgcaagagcccggctacgattcggggcgtcatggcgtgttacgccaacagac
aaactgttgctggatttgcgaggcctggtcggtagtgagcaggtggaactggaatttgac
taa
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