Rahnella bonaserana: QNM34_07610
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Entry
QNM34_07610 CDS
T09076
Symbol
ldtD
Name
(GenBank) L,D-transpeptidase
KO
K21470
L,D-transpeptidase YcbB
Organism
rbon
Rahnella bonaserana
Brite
KEGG Orthology (KO) [BR:
rbon00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rbon01002
]
QNM34_07610 (ldtD)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rbon01011
]
QNM34_07610 (ldtD)
Peptidases and inhibitors [BR:
rbon01002
]
Cysteine peptidases
Family C82
QNM34_07610 (ldtD)
Peptidoglycan biosynthesis and degradation proteins [BR:
rbon01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
QNM34_07610 (ldtD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
PG_binding_3
Motif
Other DBs
NCBI-ProteinID:
WHZ42134
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Position
1699113..1700963
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AA seq
616 aa
AA seq
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MLMNQRSLKFLVASCLLASGLSPWFAAWAAMPAMPVGKTTLSSVQSMSQLQAELMPRGIR
PLYLSSLSSLYAANHMQPMWKDRETVQIFQQQLAELAISGIQPQFTQWVKWLTDPEVTGM
ARDVVLSDAMLGYLQFTSSVEANGDKWLYGTTPYKMTTPSLTVINQWQLAVRQGNTAHYM
STLTPQHPYYAKMHDALKTMLADNRPWPAMRGSASLRPDQISDDVPALREILSRTGMMVA
SPQETSAPKPTDETIAPNTPGSAANDDLSVDETADKAQPATPAVSPSATSVQDVLPSVQS
TETPAPAASVAVANNQYTPDLVEAVKRFQKWQGLEADGIIGGRTRQWLNASPQLRATLLA
LNIQRLRILPGNVNTGIMVNIPNYQLTYYLNGSEVLSSRVIVGRPSRKTPLMSSALNNVV
VNPPWNVPTTLVREDIVPKAMNNPGYFQQHGYQVLSGWSNDAEVIDPSMIDWAMVSPNHF
PYRIRQAPGVSNSLGRYKFNMPSSDAIYLHDTPNHNLFSKDIRALSSGCVRVNKASELAN
MLLQDAGWNDTRISSALQGGNTTYVAIRHHIPVKLFYLTAWVADDGKPQFRTDIYNYDST
VRSGAQILPQAEILLQ
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgttaatgaatcaaaggtctctcaagtttttagtcgccagctgtttgctggcgagcggt
ctttctccgtggtttgctgcctgggcggcgatgcctgccatgcctgtcgggaagaccacg
ttatccagcgtgcaaagcatgagccagttgcaggcagaattaatgccaagaggcatccgc
ccgctttatctgtcatctctttcgtcactttacgccgctaaccatatgcagccgatgtgg
aaagatcgggaaacggtacaaatattccagcagcagttagctgagctggccatttcaggt
attcagccgcagtttacccaatgggtgaagtggctgactgatcctgaagtgacaggcatg
gcgcgcgacgtcgtattatcggatgcaatgctgggatatctgcagtttaccagcagtgtt
gaagccaacggggacaaatggctttacggcacgacgccgtacaagatgaccacaccttcg
ctgaccgtgattaatcagtggcagctggcggtgcgccagggtaataccgcgcactatatg
tcgaccctgacgccacagcacccttattacgccaaaatgcatgacgcgttgaaaacgatg
ctggcggacaaccgtccgtggcctgcgatgcgcggctcagccagtctgcgacctgatcaa
atcagtgatgatgtgccggcgctgcgtgagatcctcagccgaacgggcatgatggttgcc
tcgccgcaggaaaccagtgcgcctaaaccgacagatgaaaccatcgccccgaatacgccg
gggagcgcggcgaatgatgatttgtctgtggatgaaaccgcagataaagcgcagccagcc
acgccagcagtgagtccttctgcaacgtcggtccaggatgttctgccttctgttcagtcc
acagaaacgccggcaccggctgcttctgtggctgttgcgaataaccagtacacacctgac
ttagtggaagcggtaaaacgttttcagaaatggcaggggcttgaagcggatgggattatt
ggcggacgtacgcgccagtggctgaatgcttcgccacaactgcgcgcaacgctgctggcg
ctgaatattcagcgtttacgaattctgccggggaatgtgaataccggaattatggtgaac
attccaaactatcagctcacctattacctcaatggcagcgaggtgctgtcgtcgcgggtc
attgtcgggcgtccaagccggaaaacgcctctgatgagcagtgcgcttaataatgttgtc
gtcaatccaccgtggaatgtgccgacaacattagtacgagaagatattgtgccgaaagcc
atgaacaatccgggctacttccagcagcatggctatcaggtattgtcaggctggagcaat
gacgcggaagtcatcgatccttccatgatcgactgggcaatggtttcaccaaaccatttc
ccgtaccgtatccgtcaggctccgggggtcagcaactcgctgggccggtataaatttaat
atgccgagttctgatgcgatttatctgcatgacacgccaaaccataacctgttcagcaaa
gacattcgtgcgctgagttcagggtgcgtgagggttaataaagcgtctgaactggcaaat
atgctgttacaggatgccggctggaatgacacccgtatctcttctgcgttgcagggcggc
aacaccacttatgtggcaatacgccatcatataccggtaaaactgttttatctgacagcg
tgggttgcggatgatggtaagccgcagttccgcacagatatttacaattacgattcaaca
gtgagatccggcgcacaaattttgcctcaggcagaaattttgcttcaataa
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