Rahnella bonaserana: QNM34_15205
Help
Entry
QNM34_15205 CDS
T09076
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rbon
Rahnella bonaserana
Pathway
rbon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QNM34_15205 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbon03019
]
QNM34_15205 (rne)
03009 Ribosome biogenesis [BR:
rbon03009
]
QNM34_15205 (rne)
Enzymes [BR:
rbon01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
QNM34_15205 (rne)
Messenger RNA biogenesis [BR:
rbon03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QNM34_15205 (rne)
Ribosome biogenesis [BR:
rbon03009
]
Prokaryotic type
rRNA processing factors
QNM34_15205 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
WHZ39388
LinkDB
All DBs
Position
3333222..3336518
Genome browser
AA seq
1098 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPSNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSAEAL
QWDLTFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLA
KEHIAALGRPDFSSKIKPYVGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESTHHICPRCAGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRESVNAIEKRQGGVRAVIVPNDQMQ
TPHYHVLRVRKGEEISALSYLLPQIHEAEMLQPSEELPAERRRPEQPALAAFALQSEAPP
SSFEQPVVTEEPVKTRTATVNAPAAPVAEKSGFVSRLLSGLKSLFAPEPQQEVKPVEVPK
ETPEATETENRRNNERRNQRRQGGRRDRNGERGERNDRGNRGERGEGRDNNRDNRGEGRD
NRENNREQRDDQRRGRRNQEPVVTETRNEEVETAAREEQQQQPRRERSRRRSEDKRKPQT
EEKIQDAVAVEQVVAPVVTDETEQEDRQPAQRRQRRQLNQKIRFESEEVDHEEEAAAQLL
ITGTRPAAPAPAVVAQESSDVEPANAADSEDNQNDNARENGMPRRSRRSPRHLRVSGQRR
RRYRDERYPTQSPMPMAGAFVSPEMASGKVWITYPVAQSSEYQSSENQNTEAEAPEVLNQ
QVEIAQANTPVISETAEAVAQAETVAEAAKQEAPADITTAEAVQPVADEPVLVEPATAEP
VEETPVVEVAPEAHEPTVVEPTAVLAEPELQAVAPVADPEVQVEEKAEPVAEVKPAVETA
PVAQAPAVTEAAVVAPRFKHHATAPMTKAPAPSYVPEPARQSDWVRPEFDFDGKGSAGGH
AAVTTATAPATKPEMPAE
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcgactcagcaagaagagttgcgcgttgcccttgtagat
ggacagcggctgtatgatttggatattgaaagtccgggccatgagcagaaaaaagcgaac
atttataaaggtaaaatcacccgcattgaacctagtctggaagcggcattcgtagactac
ggcgcagaacgacatggtttcctccctctgaaagaaatttcccgtgaatatttccctagc
aactattcttcccacggccgtccaaacatcaaagatgttttgcgcgaaggtcaggaagtt
atcgttcaggttgataaagaagaacgtggaaataaaggcgcagcactgacgacgtttatc
agtctggccggtagctatctggttctgatgcctaacaatccacgagctgggggaatttcc
cgccggattgaaggtgatgaccgcactgaactgaaagaagcgctgtcttctctgcaactg
cctgatggcatgggtctgattgtgcgtactgccggtgtcggcaaatccgcagaagccctg
caatgggatctgactttccgtctcaaacattgggatgctatcaagaaagctgctgaaggc
cgccctgccccattcctgatccatcaggaaagtaacgttatcgttcgcgcattccgtgac
tacctgcgtccggatatcggcgaaatcctgattgataacccgaaaatcctcgacctggca
aaagagcatatcgccgctctcggccgtcctgatttcagcagcaaaattaaaccgtacgtc
ggtgaaattccgctgttcagtcactaccagatcgaatcgcaaatcgaatccgctttccag
cgtgaagtccgtctgccttccggcggctcgattgttatcgacagcactgaagcgctgacc
gctatcgacattaactccgcgcgtgcaacccgcggcggcgatatcgaagaaactgcattc
aacaccaaccttgaagccgcagacgaaattgcccgccagttacgcctgcgtgacctgggt
ggcctgatcgttatcgacttcatcgatatgacgccagttcgccaccagcgcgaagtggaa
aaccgtctgcgtgacgctgttcgtcaggaccgcgcccgtatccagattggtcgcatttcc
cgtttcggtttactggaaatgtcccgtcagcgcctgagcccgtcactgggtgaatctacg
caccatatctgcccacgttgcgcaggtaccggtaccgtccgtgacaacgaatctctgtca
ctgtcgattctgcgtctgattgaagaagaagcgctgaaagaaaacaccaaagaagtacat
gccatcgttccggtgccaatcgcttcttacctgctgaacgaaaaacgtgaatcggtaaat
gccatcgaaaaacgtcaaggtggtgtgcgtgcggtgatcgtacctaacgatcagatgcaa
actccgcattaccatgttctgcgtgttcgtaaaggcgaagaaatctctgcactgagttac
ctgctgcctcagatccacgaagccgaaatgctgcaaccttctgaagagttgccggctgaa
cgtcgtcgtcctgagcaacctgcgctggctgcatttgcgctgcaaagcgaagcacctccg
tccagcttcgagcagcctgttgtgactgaagaacctgtcaaaaccagaacagccacagta
aatgctccggcagctcctgttgctgaaaaatcaggttttgtcagccgtctgctgagcggg
ctgaagagcttgttcgcaccggagccgcaacaggaagttaaacctgttgaagtaccaaaa
gagacgcctgaagcgactgaaaccgaaaaccgtcgtaacaatgaacgccgcaaccagcgt
cgtcagggtggacgccgtgaccgtaacggtgaacgcggtgagcgcaatgaccgcggtaat
cgtggcgaacgtggcgaaggccgtgacaacaatcgtgataatcgtggcgaaggccgcgat
aaccgcgaaaataatcgtgaacaacgtgacgatcagcgtcgtggccgtcgtaatcaggaa
ccggtcgttaccgaaacccgtaacgaagaagttgaaactgccgctcgcgaagaacagcag
caacaacctcgtcgtgaacgttcgcgtcgccgttctgaagacaaacgtaaaccacaaact
gaagagaaaattcaggatgcagttgccgttgagcaagttgttgcaccggttgttactgat
gaaactgagcaggaagaccgtcagccagcacagcgccgtcagcgtcgccagctgaatcag
aaaatccgcttcgaatctgaagaagttgatcatgaagaagaagctgcggctcagttgctg
atcaccggtacccgtccggcagcaccagcgccggctgtggttgcgcaagaatcttctgat
gtcgagccagcgaacgcagcggacagcgaagacaatcagaatgacaacgcccgtgaaaac
ggtatgccacgtcgttcacgtcgttctccgcgtcacctgcgtgtcagcggccagcgtcgt
cgtcgttatcgtgatgagcgttacccgactcagtcaccaatgccaatggcaggtgcgttc
gtttctccggaaatggcgtcaggcaaagtttggatcacctatccggtggcccagtcttct
gaatatcagtcttctgaaaaccagaatactgaagcagaagcacctgaagttctgaatcag
caggttgaaattgcgcaggctaatacgccggtgatttcagaaactgcagaagctgttgct
caggcagaaacagtcgctgaagctgcaaagcaagaagcaccagcagatattaccaccgca
gaagccgtacagcctgttgccgacgaacctgtattggttgaacctgcaacggctgaacct
gtagaagagacgcctgttgtagaagtcgcgccggaagcacatgagccaaccgtcgttgaa
ccgactgcagtgcttgctgaacctgaacttcaggccgttgcgccagtcgcagatcctgaa
gttcaggtagaagagaaagcagagccggttgcagaagtgaaacctgccgttgagacagca
cccgttgcgcaagctccggcagtgactgaagctgcggttgttgcccctcgcttcaagcat
cacgcgacagcccctatgacgaaagcaccagcaccaagctatgtgcctgagccagcgcgt
caaagtgactgggttcgcccggagttcgactttgatggcaaaggttctgccggtggccac
gcagcagtaaccactgctactgcgcctgccactaagcctgagatgccagcagagtaa
DBGET
integrated database retrieval system
