Rahnella bonaserana: QNM34_21510
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Entry
QNM34_21510 CDS
T09076
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rbon
Rahnella bonaserana
Pathway
rbon03420
Nucleotide excision repair
rbon03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rbon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QNM34_21510 (uvrD)
03430 Mismatch repair
QNM34_21510 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rbon03400
]
QNM34_21510 (uvrD)
Enzymes [BR:
rbon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QNM34_21510 (uvrD)
DNA repair and recombination proteins [BR:
rbon03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QNM34_21510 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
QNM34_21510 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WHZ40539
LinkDB
All DBs
Position
complement(4702204..4704369)
Genome browser
AA seq
721 aa
AA seq
DB search
MDVSDLLDSLNEKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLLAVEKCSPYSIMAV
TFTNKAAAEMRHRIDQLIGTSQGGMWIGTFHGLAHRLLRAHHLDANLPQDFQILDSDDQM
RLIKRLIKALNIDEKQWPPRQAMWYINGKKDEGLRPQHVETYNNPVEATWLRIYQAYQEA
CDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNLMVDEFQDTNSIQYAWIRLLAGDN
NNVMIVGDDDQSIYGWRGAQVENIQRFLKDFPNAETIRLEQNYRSTSTILKAANSLIENN
NGRMGKNLWTEDGEGEPISLYCAFNELDESRFVVNRIKTWQDNGGALKDCAILYRSNAQS
RVLEEALLQMAMPYRIYGGQRFFDRQEIKDALAYLRLMSNRNDDAAFERVVNTPTRGIGD
RTLDVVRQTARDRQLTMWQATRALLQEKVLAGRAASALQRFTELVDALAHETSDMPLHVQ
TDRVIKDSGLFIMYEQEKGEKGQARIENLEELVTATRQFSYQDEDEDLMPLQAFLSHAAL
EAGEGQADANQDATQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLEEGGRLEEERRLAY
VGVTRAMQKLTLTYAETRRLYGKEVSHRPSRFVGELPEDCVEEVRMRANVSRPMSNRSVG
TPTSVSDTGFKLGQRVLHPKFGEGTIVNMEGSGEHSRLQVAFPGEGIKWLVAAYARLEAA
S
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttctgacctgctcgacagcctgaatgaaaaacaacgtgaagccgtggccgcg
ccgcgcagcaatctgttggtactggccggggcaggcagtggcaaaacccgcgtgctggtt
caccgcatcgcgtggctgctggccgtcgaaaagtgctcaccgtattccattatggcggtc
accttcaccaacaaagcggcggcggaaatgcgccaccgtatcgaccagctgatcggcacc
agtcagggcggcatgtggattggcaccttccacggccttgctcaccgtttgctgcgtgcg
caccatttagacgcgaatctgccgcaggatttccaaatcctcgacagcgacgaccagatg
cgtctgatcaagcgtctgatcaaagcgctgaatatcgacgagaaacaatggccgccgcgt
caggcgatgtggtacatcaacggcaaaaaagacgaaggtctgcgtccgcagcacgttgaa
acttataacaatcctgttgaagccacctggttgcgtatctatcaggcctatcaggaagcc
tgtgaccgtgccgggctggtggatttcgccgagctgttattgcgcgcccatgaactctgg
ctaaacaagccgcacattttgcagcattaccgcgaacgctttaccaacctgatggtggat
gaattccaggacaccaacagcattcagtacgcgtggatccgtctgctggcgggtgacaac
aataacgtgatgatcgtcggcgacgatgaccagtcgatttacggctggcgcggtgcgcag
gttgaaaacatccagcgcttcctgaaggatttcccgaatgcggaaactatccgtctggag
cagaactaccgttcgaccagcaccattttgaaagccgctaactcgctgattgaaaataat
aacggccgtatgggtaaaaacctgtggaccgaagacggcgagggcgagccaatttcactg
tattgcgcgttcaatgaactggatgaatcgcgctttgtggttaaccgcatcaaaacctgg
caggacaacggcggtgcgctgaaagattgcgccattctttaccgcagtaacgcccagtcg
cgtgtactggaagaagccttattgcagatggcgatgccgtaccgcatttatggcggacag
cggttcttcgaccgtcaggaaatcaaagatgcgctggcgtatctgcgtctgatgtctaac
cgtaatgacgatgctgcgttcgagcgcgtggtgaacaccccgacgcgcggcatcggcgac
cgtacgctggatgtggtgcgtcagaccgcccgtgaccgtcagctgacaatgtggcaggcc
acgcgcgcattgttacaggaaaaggttctggcagggcgtgcggcgtctgccctgcagcgt
ttcaccgaactggttgatgcactggcgcatgaaacgtcagacatgccgctgcatgtgcag
actgaccgggtgatcaaagattccggcctgtttattatgtatgagcaggaaaaaggcgaa
aaaggccaggcgcgtatcgaaaacttagaggaactggtgacggcaacgcgtcagttcagc
tatcaggatgaagacgaagacctgatgccgttgcaggcattcctgtcccatgccgcgctg
gaagcgggcgaagggcaggccgacgctaatcaggacgccacgcagctgatgacgttgcac
tcggcgaaagggctggaattcccgcaggtgtttatcgtcggcatggaagaaggtatgttc
ccgagccagatgtcgctggaagaaggcggacgtctggaagaagaacgccgtctggcgtac
gtcggcgttacccgcgccatgcaaaaactgaccctgacttacgccgaaacccgccgctta
tacggcaaagaagtctcgcaccgtccgtcacgttttgtcggagaattaccggaggattgt
gtcgaagaagtcaggatgcgcgccaatgtgtcacgtccgatgagcaaccgcagcgtcggc
acgccaaccagcgtcagcgataccggcttcaaactcggccagcgcgtcctgcatccaaaa
tttggtgaaggtaccatcgttaacatggaaggcagcggcgaacacagccgtctgcaggtg
gcgttcccgggggaagggattaagtggcttgtcgccgcctacgccaggttagaggccgca
agctag
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