Ruminococcaceae bacterium CPB6: B6259_00420
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Entry
B6259_00420 CDS
T04880
Name
(GenBank) hypothetical protein
KO
K03660
N-glycosylase/DNA lyase [EC:3.2.2.-
4.2.99.18
]
Organism
rbp
Ruminococcaceae bacterium CPB6
Pathway
rbp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rbp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
B6259_00420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rbp03400
]
B6259_00420
Enzymes [BR:
rbp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
B6259_00420
DNA repair and recombination proteins [BR:
rbp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
B6259_00420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OGG_N
HhH-GPD
SelB_WH_2nd_bact
HHH_2
Motif
Other DBs
NCBI-ProteinID:
ARP49489
UniProt:
A0A1W6WB53
LinkDB
All DBs
Position
complement(100392..101195)
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AA seq
267 aa
AA seq
DB search
MLNLRKTLLCGQCFRWQETAPGVFSGTAGGRFLTVSQKDLPLLKADPFWCSYFDLGTDYD
TLQRQLAVLYPTLREAAQLGMGIHILRQDPWEALCSFILSQNNNIPRIQGIINRLCGGQE
ESLPPIMSGLRQQKSLHPFPSAETLAGQTEQDLAPLRCGFRARYLLDAAEKVASGTVNLE
ALRTAPLEEARRQLMTIIGVGPKVADCTLLYGLHRMEAFPKDVWIKRAMAQWFPGVAPSS
FGPAAGLAQQYIFCWVRQQAGRTVSHK
NT seq
804 nt
NT seq
+upstream
nt +downstream
nt
atgttgaatcttcgcaaaacactgctgtgcgggcagtgcttccgctggcaggaaaccgca
ccgggtgtgttttcgggcacagcgggcggacgcttcctgaccgtctcccaaaaagacctg
ccgctgttaaaagcagaccctttttggtgcagctattttgacttgggcaccgactatgac
acactgcagcggcagcttgccgtcctgtatcccaccctgcgggaagctgctcagcttggt
atgggtatccatattctgcggcaggacccgtgggaagcactatgttccttcattctctca
caaaacaataatatcccccgcattcagggaattatcaaccggctgtgcggcggccaggaa
gaatccctgcccccaattatgtccggcctgcgtcagcagaaaagcctgcacccgtttcct
tccgccgaaacactcgcgggccaaacggagcaagaccttgcgccgctgcgatgcggcttc
cgggcacggtatctgttggacgccgccgaaaaagttgccagcggtacggtgaatctggaa
gcgctgcgcaccgcaccgctggaagaagcacggcgtcagttgatgacaattattggtgtc
gggccaaaagtggccgactgcacactgctgtacggcctgcaccgtatggaagcttttcca
aaagatgtttggattaagcgagccatggcacaatggtttcccggtgtggcgccatcatct
ttcggaccggcggccggtcttgcccagcagtatatcttttgttgggttcggcagcaggcg
ggccgaactgtttcgcacaagtaa
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