Ruminococcaceae bacterium CPB6: B6259_01605
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Entry
B6259_01605 CDS
T04880
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
rbp
Ruminococcaceae bacterium CPB6
Pathway
rbp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B6259_01605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbp03019
]
B6259_01605
Messenger RNA biogenesis [BR:
rbp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B6259_01605
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_2
KH_KhpA-B
KH-I_KHDC4-BBP
Ribosomal_S18
ATG14
Motif
Other DBs
NCBI-ProteinID:
ARP49698
UniProt:
A0A1W6WCK6
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Position
complement(331632..333188)
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AA seq
518 aa
AA seq
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MNPILVTVILCIVCVAAGIAAGFFAGERYRKHTAELAIGSAEEEAKRIVNDAIKSAEGKK
KEAVLEGKDELHRMRSEADREINDRRKEIQRQERRAQQKEENLDRKLESLENKEDKLTKK
NKQAEDRLNEAEDIKKQQLEKLERISGFTAEQAKEYLLNHFESELMHEKAVKLRDIEQQT
KDEADSTAREVISMAIQRCAADHVSEATISVVPLPNDEMKGRIIGREGRNIRTIETLTGV
DLIIDDTPEAITISSFDPVRREVARIALEKLIADGRIHPARIEETVEKARREVDTSIKQA
GENAVLQTGITGIHPELIKLLGRLRYRTSYGQNVLEHSLEVASLAGIMASELGLDPTMAR
RAGLLHDIGKALDHEMEGSHVDIGVNVARKYKESEAVVHAIAAHHNDIEPKTVIACLVQA
ADAISAARPGARRENAENYIKRLEKLEEVASSFEGVERCYAIQAGREIRVIVKPEAISDD
QMTMLAHDICKKIEADLEYPGQIKVNIIRESRAVDYAK
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgaatccgatcttagtaacagttatcctttgcattgtctgtgtggctgcaggcattgct
gcgggattttttgcgggagaacgctaccgcaaacataccgccgagcttgccatcggctcc
gccgaggaggaagcaaagcggattgtcaacgacgcgattaaatccgcagagggaaagaaa
aaagaagccgtactggaagggaaagacgaactgcaccgcatgcgcagcgaagccgaccgt
gaaattaacgaccggcgcaaggaaattcagcgacaggaacgccgtgcgcagcagaaagaa
gaaaacctggacagaaagcttgaatccctggaaaataaagaggataagctgaccaaaaag
aacaagcaggcggaggaccgcctgaatgaagcagaggacattaaaaagcagcagttggaa
aagctggagcgtatctccggctttacggccgagcaggcaaaggaatacctgctgaaccac
tttgagtccgagctaatgcacgaaaaagccgttaagctgcgtgacattgagcagcagaca
aaggacgaagcggacagcactgcccgcgaagtcatctccatggctatccagcgctgcgca
gcagaccacgtttccgaagcaactatttcggttgttccgctgccgaacgatgagatgaaa
ggccgcattatcggccgtgagggccgcaacatccgtacaatcgaaacactgacaggtgtt
gaccttatcattgacgatacaccggaagccattaccatttccagctttgacccggttcgc
cgtgaggtagcccgcatcgcgctggagaaactgattgctgacgggcgcattcacccggca
cgcattgaagaaacggttgaaaaagcccgccgtgaagtagatacttccattaaacaagct
ggtgaaaatgctgtcctacagacaggcatcaccggtattcatccagagcttatcaagctg
ctcggccgcctgcgctaccgcacaagttacggccaaaacgtactggaacattccctggaa
gtggcttctcttgccggcattatggcttccgagctggggctagacccaaccatggcacgc
cgtgccggtctgctgcatgatatcggcaaagcgcttgaccatgaaatggaaggctcccat
gtagacatcggtgtaaacgtggcccgtaagtacaaagaaagcgaagcggtcgttcacgca
attgccgcccaccataacgacattgagccaaagaccgttattgcctgtttggtacaggct
gctgatgccatcagcgccgctcgtccgggtgcgcgccgtgaaaatgcagaaaactacatt
aagcgtttggaaaagctggaggaagttgcatcttccttcgaaggtgttgaacgctgctat
gcgattcaggccggccgtgaaatccgtgtcattgtaaaaccggaagctatttcggacgac
caaatgaccatgctggcacacgacatctgcaaaaagattgaggctgacctggaatatccg
ggccaaattaaagtgaacatcatccgcgaaagccgcgctgtcgactacgcgaaataa
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