Ruminococcaceae bacterium CPB6: B6259_03020
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Entry
B6259_03020 CDS
T04880
Name
(GenBank) endonuclease IV
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
rbp
Ruminococcaceae bacterium CPB6
Pathway
rbp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rbp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
B6259_03020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rbp03400
]
B6259_03020
Enzymes [BR:
rbp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
B6259_03020
DNA repair and recombination proteins [BR:
rbp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
B6259_03020
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Motif
Other DBs
NCBI-ProteinID:
ARP49947
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Position
623902..624741
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AA seq
279 aa
AA seq
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MFLGMHVSASAGFLHMGKEALSVGANTFQFFTRNPRGGKAKTLDPQDAAALCSFLQENHF
GPIVAHAPYTMNACAAKPEVRDFAFRAMKDDLSRMEYLPGNYYNFHPGSHVGQGVETGIQ
KITGVLNTVLTPEQHTTVLLETMAGKGTEVGRSFEELRAILDGVQLTDKVGVCLDTCHVY
DAGYDIVNDLDGVLETFDRVIGLQRLKAVHLNDSKNPYASHKDRHESIGNGSLGLAALVR
VLTHPALCGLPFILETPQDTAGHGKEIALLRAAVYAKKE
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atgtttttgggtatgcatgtatccgcctcagccggttttctgcacatgggaaaagaggcg
ctctccgttggtgcgaacacatttcagttttttacccgcaatccacgcggcgggaaggcc
aaaacactggacccgcaggacgcagcggcattgtgcagttttctgcaggaaaaccacttt
gggccaatcgttgcgcacgcgccctataccatgaacgcctgtgcggcaaagccggaggtg
cgggattttgcgttccgcgcgatgaaggacgacctgagccgcatggaatacctgccgggc
aactactataattttcaccccggcagccatgtggggcagggggtggaaaccggtattcaa
aaaattacaggggtactcaatacggtgctgacacccgaacagcacacgaccgttctgctg
gaaaccatggccggaaaagggacagaagtaggccgcagcttcgaggaactgcgtgccatt
ttggatggggttcagctgacggacaaggtcggtgtttgtctggacacttgccatgtatat
gacgccggatatgacattgtcaatgatttggacggtgtactggaaacctttgaccgtgtc
attggtctgcagcggctgaaagcagttcatttgaatgacagcaagaacccttatgcaagt
cataaggaccgccacgaatcaatcggcaacggttccttggggcttgcggcactggtgcgt
gtgctaacgcacccggcgctgtgtggtctgccgtttattttggaaacgccgcaggacaca
gcagggcacggaaaagaaattgcactgctgcgggcagcagtgtatgcgaaaaaagaataa
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