Ruminococcaceae bacterium CPB6: B6259_05310
Help
Entry
B6259_05310 CDS
T04880
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
rbp
Ruminococcaceae bacterium CPB6
Pathway
rbp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rbp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B6259_05310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rbp03400
]
B6259_05310
DNA repair and recombination proteins [BR:
rbp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B6259_05310
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
B6259_05310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
RsgA_GTPase
AAA_16
AAA_29
nSTAND1
nSTAND3
AAA_21
AAA_23
AAA_22
AAA_25
AAA_15
DnaJ_CXXCXGXG
AAA_24
NACHT
MMR_HSR1
cobW
DUF4350
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
ARP50344
UniProt:
A0A1W6WDX1
LinkDB
All DBs
Position
complement(1058662..1061499)
Genome browser
AA seq
945 aa
AA seq
DB search
MPSKTIFIKGAREHNLKNINLKIPRDKLIVFTGLSGSGKSSLAFDTIYAEGQRRYMESLS
SYARQFLGQMEKPDVDFIDGLSPAISIDQKTTSKNPRSTVGTVTEIYDYLRLLYARVGTP
HCPICGREIQQQTIDQIVDQVLKLPEHTKIQVMAPVVRARKGTHAKQLESARKSGFVRAR
VDGILYDLSEKIVLEKNKKHTIDIIVDRLMVKPEIRSRLADSLETAASLAGGLVVISPNG
QDDILFSQNYACPEHGLGIDELTPQMFSFNSPSGACPKCTGLGVFMKIDPDLIIPDKSLS
VRKGGLRGSGWAMEGNSIASMYLEGLAKHYHFSLDTPIADLSPKIVDILLFGNKGEKIEV
ERDTNFGHSKYMATFEGIIPNFERRFRDTSSNWIKEEIESYMSAIPCDACHGNRLNPMSL
AVTVGGKNIAELCSLSVLQALDFLNTLQLTGRKKLIAEPILKEVRSRLTFLKSVGLGYLT
LSRSAGTLSGGESQRIRLATQIGSSLMGVVYILDEPSIGLHQRDNAKLLATLKHLRDLGN
TVIVVEHDEETMRAADHLVDIGPGAGIHGGEVVYNGPPADIVNCEASITGQYLSGKRKIE
VPSIRRPGNGKKLSIIGAAQNNLKHINVDIPLGKFVCITGVSGSGKSSLINEILYKYLAA
QLNGAKLHPGKFKEIRGLSALDKVIEINQSPIGRTPRSNPATYTGMFTDIRNLYASTQDA
KLRGYTPGRFSFNIKGGRCEACEGGGIIKIEMHFLPDVYVPCDVCHGKRYNRETLEIKYK
GKSIYDVLEMTVEEGLTFFQAIPRIARRLQTLEEVGLGYIKIGQPATTLSGGEAQRVKLA
AELSKRPTGRTIYILDEPTTGLHMADVHRLINVLQKLVDNGNTVVVIEHNLDLIKTADWI
IDLGPEGGDAGGNIVAQGTPEQVAAVPESYTGQYLRKMLPAFQGK
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atgccgtccaaaacaatttttattaagggtgctagagagcacaatctaaaaaatatcaat
ctgaaaattccacgtgataaactaattgtctttacgggactgtctggttcaggaaaaagc
agcctggcttttgatactatttatgcagaaggtcagcggcgctatatggaatctctttct
tcttatgcacgtcagttcctaggacaaatggaaaaaccggatgttgactttatagacgga
ctttctcctgctatttcaatagaccaaaaaacaacatctaaaaatcctcgttctacggtt
ggaacggtaacagaaatttacgactatttgcgtcttttgtatgcccgcgtcggtacccca
cactgtcccatatgcggcagagaaattcagcagcaaacgattgaccaaattgtagaccaa
gttctaaagctgccagaacatacgaaaattcaagtgatggccccagttgtgcgtgcccgc
aagggaacacatgccaaacagctagagtccgcacgaaaaagcggttttgtccgtgctcgt
gtagatggtattctatacgacttatctgaaaaaattgtgcttgaaaaaaacaaaaagcat
acgattgacattatcgtagaccgactgatggtaaaaccagaaatacgttcccgtttggcg
gatagtttagaaacagcagcttcgctggccggaggtctggttgtcatcagcccgaatgga
caagacgatattttgtttagtcaaaactacgcgtgtccggaacacggtcttggaattgac
gaactgacaccgcagatgttttcttttaacagcccttccggtgcctgcccaaagtgtact
gggcttggcgttttcatgaaaattgacccggacctgattattccggataaatcgctgagc
gtccgaaaaggtggccttcggggcagcggctgggcaatggagggaaactcgattgcttct
atgtatttggaaggtcttgctaaacactatcatttttcccttgatacaccgattgctgat
ttgtcaccaaaaatcgtagatattctcctgtttggaaacaaaggagaaaaaatagaggtg
gaacgggatactaattttgggcacagcaaatacatggccacatttgagggaattattcca
aattttgagcggcgttttcgggatacaagcagtaactggattaaagaagaaatcgaatcc
tacatgagtgccattccctgtgatgcctgtcatggaaaccgactgaaccccatgagccta
gccgtaaccgtcggcggaaagaatattgcagagctctgcagcttgtcggtcctacaggca
ctggactttctgaatacgctgcaactgaccggacgcaaaaagctaatcgccgaaccgatt
ttaaaagaagtacgttcccgtctgacttttttaaaaagcgtaggattgggatatttgaca
ttatcccgctcggcaggcacactttctggaggcgaaagccagcgtatccgtttggctaca
cagattggctcgtccctgatgggcgttgtatacattcttgatgagccaagcattggcctg
catcagcgtgacaatgctaaattgcttgcgactttaaagcatctgcgtgaccttggaaat
accgtcattgtcgttgaacatgatgaagaaacaatgcgcgccgctgaccatctggtggat
attggacctggtgcgggcattcacggaggagaagtcgtctacaacggacctccggcagac
atcgtaaactgtgaagcttccattacaggacaatacttgagtggaaaacgaaaaattgag
gtcccttccatacgtcggccaggcaacggcaaaaagctgtccattattggtgctgcacaa
aacaacttaaagcatatcaatgtagacattcctctcggaaaattcgtttgtatcactggc
gtttccggttccggaaaatcttcacttatcaatgaaattctatacaaatatcttgctgcc
cagctgaacggtgcaaaactgcaccctggaaagttcaaagaaatccgtggcttgtctgca
ctggataaagtgattgaaatcaatcaaagtcctatcggccgtacgccgcggtctaatcct
gccacttataccggtatgtttacagatatccgtaacctgtatgccagtacgcaggacgcc
aagctgcgtggatatacacccggcagattttcctttaatataaaaggcggccgctgtgaa
gcttgtgagggcggcggaatcattaaaatagaaatgcattttcttccggatgtttatgta
ccctgtgatgtctgccatggaaagcgctataatcgagaaacactggaaatcaagtacaaa
gggaagtccatttacgatgtactggaaatgacagttgaagagggacttacgttctttcag
gctattccgcgtattgctcggcgcctgcaaacattggaagaagtaggattgggatacatt
aaaatcggccagcctgccacaacgctttctggtggagaggcgcagcgagtcaagctggcc
gcagaactaagcaaacggcctacaggccgaactatctatattctggatgaaccgacaacg
gggctccatatggctgatgtacatcgcctgattaacgtcctgcaaaagttagtggacaac
ggcaatactgtcgttgttattgagcataatttggacttaatcaaaacagccgactggatt
attgatcttggccctgagggtggagatgccggaggaaacattgtagcacagggcacacca
gagcaagtggcagctgtgccagaatcttataccggacaatatttgcgcaaaatgctgcct
gcttttcagggaaagtaa
DBGET
integrated database retrieval system
