Ruminococcaceae bacterium CPB6: B6259_06105
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Entry
B6259_06105 CDS
T04880
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rbp
Ruminococcaceae bacterium CPB6
Pathway
rbp03030
DNA replication
rbp03430
Mismatch repair
rbp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rbp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B6259_06105
03430 Mismatch repair
B6259_06105
03440 Homologous recombination
B6259_06105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rbp03032
]
B6259_06105
03400 DNA repair and recombination proteins [BR:
rbp03400
]
B6259_06105
Enzymes [BR:
rbp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
B6259_06105
DNA replication proteins [BR:
rbp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
B6259_06105
DNA repair and recombination proteins [BR:
rbp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
B6259_06105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
PHP
DNA_pol3_finger
HHH_6
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
ARP50484
LinkDB
All DBs
Position
complement(1244556..1248056)
Genome browser
AA seq
1166 aa
AA seq
DB search
MFVHLHLHTEYSLLDGACRMERLLDTAKARGDRAVAITDHGVMYGAVDFYKAAKARGIKP
IIGCEVYVAQRSRMDRTRELDGENYHLVLLCENNEGYQNLIQLVSRAWLEGFYRKPRVDM
ELLRKYHKGLIALSACLSGEIPRVLSAEDYPRAKKAALRYADIFGNGNFYLELQDHGLPE
QKRVNAGLLRLADETGLPLVVTNDCHYINQEDSEMHRVLLCIQTNHTLQESGGLEFGSTE
FYYKTEEQMRALFPQHPEAADNTVKIAERCNVTFEFGKTKLPRFDTPNGQDNVAYFREKC
YAGLHEHYGEHPKPEIVHRLEYELNTIEKMGYVNYYLIVHDFVRHAKEVGIPVGPGRGSG
AGSLAAYCIGITGIDPIQYDLLFERFLNPERVSMPDFDIDFADDRRPEMIEYVTQKYGAD
HVAQIVTFGTMAARASVRDVGRVMGMPYAMVDSIAKMIPTVPGKSITLDRALETSPELRR
RYNEDQQVHRLLDMARKLEGMPRNASTHAAGVVITDKPVAEYVPLAKNGDATVCQYTMTT
LEELGLLKMDFLGLRNLTIIHAAEEMIRQQQPEFHVDKVPLDAPEVYEMLSAGSTEGVFQ
FESAGMRSVIMQLRPEGMEDLIAVISLYRPGPMESIPRYIQNRHHPKQVTYAHPLLEPIL
KVTYGCIVYQEQVMQIFRSLAGYSLGRADIVRRAMSKKKHDVMDREKEIFLHGLQREDGT
WEVPGCLNNGVDEATALKIYGEMENFASYAFNKSHAAAYAYLAYQTAYLKCFYPRQYMAA
LMTSVLDNSGKLSSYIAECSRLHIRVLPPEINSSEASFTVVGNDIRFGLLAVRNLGRGLI
DFVLQERRQAGPFHSFYDFCKRTFDKMNRRALESLVRCGALDGLGNNRREMMTAVPLVLE
TLGNDRRRNVEGQIGFFSQMNGGEDEAFQIAPMPDYSLQDKLKMEKEATGMFLSGHPMAA
YADLYQKLGAVKIGDLLECFSSAGDNRWHDGDHVTILGIVSDIKTKVTKSGGTMAFVTLE
DFNGSMEMLVFPQTLSRFSPLLEDGNVLCASGHLSVREEEEPKLLCDEMQSAEHLKQTDS
SDTGQTKSGKQVKPGLYLRVQSEAAPAWLRAQKYIAIFDGRTQLYVAFQKEKKLYRAPAV
EGVAVNDILLQELRRVLGDGNVAFVK
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtccatttacatcttcataccgaatacagtttgttggacggtgcctgccgtatg
gaacggctgctggataccgccaaagcccgtggagaccgcgcagttgccattactgaccac
ggtgtcatgtatggcgcagttgatttttataaagccgccaaagcccgcggaattaagccc
attatcgggtgtgaagtgtatgtggcacagcgcagccgtatggatcgcacacgggaactg
gatggcgaaaattaccatttggtgctgttgtgcgagaacaacgagggctatcaaaatttg
attcagctggtcagccgtgcatggctggagggcttctaccgcaagccccgcgtagatatg
gaactgctgcgaaaatatcataagggattgattgcattatcagcctgcctgtctggtgag
attccgcgcgtcctttcggctgaggactatccgcgcgccaaaaaagctgctctgcgctat
gcggatatttttggcaatggtaacttttatttggagctgcaggatcacggactaccggaa
caaaaacgcgtcaatgccggcctgcttcgtttggccgacgaaaccggtctgccgctggtg
gtcaccaatgactgccattatatcaatcaagaggatagtgagatgcaccgcgtgctgctg
tgtatccaaaccaaccacaccttgcaggaatcgggcgggctggaatttggcagtacagaa
ttttactataaaaccgaggagcagatgcgcgcgctgtttccgcagcatccggaggcagcc
gacaacactgttaagattgctgagcgctgcaatgtaacgtttgagtttggcaaaacgaag
ctgccccgatttgacaccccgaacggacaggataatgtcgcttattttcgtgaaaagtgc
tacgctggtctgcacgagcactatggggaacacccaaagccagaaattgtgcatcggctg
gagtatgaactgaatacgattgaaaagatggggtatgttaattattaccttattgtgcac
gactttgtccgtcatgctaaagaagtaggcataccggtcgggccgggacgtggttctggt
gcgggcagccttgccgcgtactgcattggcattaccggaattgaccccattcagtatgat
ttgctgtttgaacgttttttaaatccggaacgtgtcagtatgccggattttgatattgat
tttgccgatgaccgccgcccagaaatgatcgagtatgtcacacagaaatacggtgccgac
catgtggcacagattgtcacgttcggcaccatggcggcgcgggcctcggttcgtgacgtg
ggccgtgtaatgggaatgccgtatgccatggtggattccattgcaaaaatgattcctacg
gtgccgggcaagagcattacgctggaccgcgcattggaaacgtcgccggagctgcgacgc
cgatacaatgaagaccagcaggttcaccgcctgctggatatggcccgcaagctggaggga
atgccgcgaaatgcttctacgcacgctgccggtgttgtcattacggacaagccggttgcc
gagtacgtgccactggccaaaaacggagatgcgacagtgtgtcagtacaccatgaccact
ttggaggaactgggactgctgaagatggactttctcggcctgcgcaacttaaccattatt
cacgcggcggaggaaatgattcgccagcagcagccggagtttcatgtagacaaggttccg
ctggatgcaccggaagtatatgaaatgctttctgccggcagcaccgagggtgtgttccag
tttgagtcggcaggtatgcgcagtgtgattatgcagctgcggccggaaggaatggaagac
ctcatcgctgttatttcactgtatcgccccggtcctatggagtccattccgcgctatatc
caaaaccgtcaccatccaaagcaggttacctacgcacacccgctgctggaaccaattcta
aaggtaacatatggctgtattgtctatcaggaacaggtcatgcagatattccgctccttg
gcgggctacagccttggtcgtgctgacattgtgcgccgtgccatgagtaaaaaaaagcac
gacgtaatggatagggaaaaggaaattttcctgcatggcctgcagcgggaagacgggaca
tgggaggtccccggctgtttgaacaacggcgtggacgaagcaaccgcactgaaaatatac
ggtgagatggaaaacttcgcttcctatgcctttaataaatcccacgcggccgcgtatgcg
tatcttgcttatcaaacagcatacctcaagtgtttctatccgcgtcaatacatggctgcc
ctgatgaccagtgtgctggacaattccggcaagctttcttcttatattgcagagtgttcc
cgcctgcatatccgtgttctgccgccggaaatcaactccagtgaggcatcctttacagtt
gtagggaatgacattcgttttggtttgttggcggttcggaaccttggccgcgggctgatt
gatttcgttttacaggaacggcggcaggccggtccgtttcattccttttatgatttttgt
aagcgtacttttgataaaatgaaccgccgtgcgctggaaagccttgtccgctgcggtgca
ctggatggattgggcaataaccgtcgcgaaatgatgacagctgtgccgttggtactagaa
acgctgggcaatgaccgccggcgcaatgtggagggacaaattggtttcttcagccagatg
aacggtggggaagatgaagccttccaaatagcaccgatgccggactacagtctgcaggac
aagctgaaaatggaaaaggaagcaacaggcatgttcctttccggccaccccatggcggca
tacgccgatttgtaccaaaagctgggtgctgtaaagattggcgatttgctggaatgcttt
tcgtcggcaggggacaaccgctggcacgatggagaccatgttacaattttaggaattgtg
tctgatattaaaacaaaggtgacaaaaagcggcggcacaatggcttttgtaacactggag
gactttaacggttctatggaaatgttggtttttccgcagacgctgtcccgtttttcacct
ttgctggaggatggaaatgtgctgtgtgcttccggacacctaagtgtacgggaggaagag
gagcccaagctgttgtgtgatgagatgcagtcagcggaacacctgaagcagacggacagc
agtgatactggacagacaaaaagcgggaagcaagtaaagccggggctgtacctgcgggta
cagagtgaagccgcccccgcatggctgcgcgcacaaaagtatatcgctatttttgacggg
cgcacacagctgtatgttgcttttcaaaaggagaaaaagttgtaccgcgcgccagctgta
gaaggtgtggctgtaaatgacattctgctgcaggaactgcgccgtgtactgggcgatggc
aatgttgccttcgtgaaataa
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