Ruminococcaceae bacterium CPB6: B6259_07755
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Entry
B6259_07755 CDS
T04880
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rbp
Ruminococcaceae bacterium CPB6
Pathway
rbp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B6259_07755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbp03019
]
B6259_07755
Messenger RNA biogenesis [BR:
rbp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B6259_07755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
CFAP54_N
Motif
Other DBs
NCBI-ProteinID:
ARP50775
UniProt:
A0A1W6WEX3
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All DBs
Position
complement(1573319..1575298)
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AA seq
659 aa
AA seq
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MSDEKKEKNLIPDTAQAETAFQEEQPRRKPADQVIGGESVLLPEPAPQPEQKQPAPKAEN
EPRRRPRRPHRPPQPKQPVASAAAPQAEHEPRRRPRRPRGKSGASSKPVIRMAFLGGLNE
VGKNITLVECQGDMFLLDCGMAFPDDDMLGVDLVLPDFTLVEKYADRIQGIVLTHGHEDH
IGGLPYLLKKVNLPLYGTPLTLGLVKGKLKEHGLLNKVKMNVVHPGDTIRFGCMAVELIH
VNHSIPDAVGLAIHSPAGTVVHTGDFKIDCTPEWGEMIDLGRFAQLGKEGVLALLSDSTN
AERPGFTKTEQMIANSFEAMFQRAEHKRIIIATFASNVSRVQQIIDCAVKYDRKVALSGR
SMVNVMSIGVEMGYLHVPDGVMIDIDLIKKYPKDKIVLITTGSQGEPMSALSRMAYADHR
KVEVGPDDFIIISARPIPGNEKSVGNVIDELMKRGCEVEYGSMYEVHVSGHACQEELKLM
QGIVKPKYFIPVHGEQKMLHQHAALAYSMGMNRQNVCIADIGDVIELSEDHMRHLPKAVP
AGNVLVDGLGVGDVGSIVLRDRKHLAEDGLIVVVCTIASETGHVVSGPDVVSRGFVYVRE
SERLMDDAKDLVYTVLEQCADNGIHDWGTLKTNIKDSLSHLLYDRTRRSPMILPIIMEV
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagacgaaaaaaaagaaaagaatttgataccggatacggcacaggcggaaactgct
tttcaggaggaacagccgcgcaggaaaccagccgatcaggtgattggcggcgaaagtgta
ctgctgccagaaccggcaccgcagccggaacagaaacagccggcaccgaaagcggagaat
gagccgcgccgccgtccgcgccgcccgcaccgtccgccgcagccaaaacagccggtggct
tccgctgcggcaccgcaggcggagcatgagccacgccgccgtccgcgccgtccgcgcgga
aaaagcggtgcttccagtaagccggtcattcgtatggcctttttgggcggtctaaacgaa
gtcggcaagaatatcacgctggttgagtgccaaggcgatatgttcctgctggactgcggc
atggcttttccggatgacgatatgctgggtgtggatttggtcctgccggactttacgctg
gtcgaaaaatatgcggaccgtattcagggcattgtgctgacgcatggtcatgaggaccac
atcggcgggttgccgtatctgctgaaaaaagtgaatctgccgctgtatggcacgccgctg
acgctgggccttgtcaagggaaaactcaaggaacacggtttgctgaataaagtaaaaatg
aacgttgtgcaccccggcgatactatccgctttggctgcatggcagtggaacttatccat
gtcaaccactccattccggacgccgtgggtcttgccattcattccccggcaggcaccgtt
gtgcataccggtgactttaagattgactgtacgccagagtggggtgaaatgattgacctg
ggccgttttgcacagttgggcaaagagggcgtgctggcactgctgtccgactcaaccaac
gcggaacgccccggctttaccaaaacggaacagatgattgccaattcctttgaggccatg
ttccagcgtgcggagcataaacgtattatcattgcgacttttgccagcaatgtcagccgt
gtgcagcagattatagactgtgcggtcaagtatgaccgcaaggtcgcgctttccgggcgc
agcatggtgaacgtgatgtccatcggtgtggaaatgggctatctgcatgtgccggacggt
gtcatgattgatattgacctgattaaaaaatacccgaaggataaaatcgtccttattaca
acaggcagccagggtgagccaatgagtgccctgtcccgcatggcctacgctgaccaccgc
aaggtggaggtcggtccggacgacttcatcatcatttccgcacggccgattcccggcaac
gaaaagagcgtcggcaatgtcattgatgagctgatgaaacgcggctgtgaagtagagtat
ggctccatgtacgaagtacacgtttccggacacgcctgtcaggaagagctgaaactgatg
cagggcattgtcaagccgaagtactttattccagtgcacggtgagcagaaaatgctgcac
cagcacgcggcgctggcctattccatgggcatgaaccgccagaatgtctgcattgcagat
atcggtgacgtcattgagctgtcagaggaccatatgcggcatctgccgaaggccgttcca
gcaggcaacgtgctggtggatggtcttggtgtcggcgatgtcggcagcattgttctgcgt
gaccgcaaacatctggcggaggacggcctgattgttgtggtgtgcacgattgcttccgaa
acaggccatgtcgtttccgggccggacgttgtttcccggggctttgtgtatgtgcgggaa
agtgaacggctgatggacgacgccaaagatttggtctatactgtgctggagcagtgtgcc
gataacggtattcatgactggggtacgctgaagactaatatcaaggattccttgtcccac
ttgctgtatgaccgcacacgccgcagccccatgattctgccaattattatggaagtgtaa
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