Ruminococcaceae bacterium CPB6: B6259_09235
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Entry
B6259_09235 CDS
T04880
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
rbp
Ruminococcaceae bacterium CPB6
Pathway
rbp03030
DNA replication
rbp03410
Base excision repair
rbp03420
Nucleotide excision repair
rbp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rbp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B6259_09235
03410 Base excision repair
B6259_09235
03420 Nucleotide excision repair
B6259_09235
03440 Homologous recombination
B6259_09235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rbp03032
]
B6259_09235
03400 DNA repair and recombination proteins [BR:
rbp03400
]
B6259_09235
Enzymes [BR:
rbp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
B6259_09235
DNA replication proteins [BR:
rbp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B6259_09235
DNA repair and recombination proteins [BR:
rbp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
B6259_09235
NER (nucleotide excision repair)
GGR (global genome repair) factors
B6259_09235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
XPG_I
Motif
Other DBs
NCBI-ProteinID:
ARP51038
LinkDB
All DBs
Position
1870527..1873133
Genome browser
AA seq
868 aa
AA seq
DB search
MELLVLDGNSILNRAFYGIKLLTTKEGLYTNGIYGFMTVLQKLEKEVQPDATAIAFDLNA
PTFRHKRYAGYKANRHGMPEELAQQLPNLKKLLTLLGYRLVTCEGYEADDILGTLGAACT
RRKDTCVIATGDRDSLQLVGPYVSVRLARTKYGQPQVTLYDEQRVMEEFGVTPPEMIEIK
ALQGDSSDCIPGVRGIGPKGAGQLIQQYHSIDYIYDHLKELDIRESMRQKLENGRESAYL
SRELGTIRTDVPVGTDIQGYVRGPVQKQEATDLMRRLEFFKMLESLDLGDTVEQSNPAEA
DTAVALVLHPDIEQLCSKLKADGHLYLAGIFEGRSLQRLSVVHKQAVFLLESPQEWDRVF
ALHLPCCTFDSKLLYLAVESSGAELLVETDALLAAYLLNPTAKSYSYAHLCQEYGIPLPS
SVTPKGLQPQDLMRMDTLSACGQWQSLPQLCSVLEKNISEANQTTLLQNIEQPLARILAH
MEQAGFAVDAKRIAAYGDVLAQKADALQKQIWEEVGYEFNLNSPKQLGEALFVKLGLPHG
KKTKSGWSTSAAVLENLRYDNPVVELVLQYRTVSKLKSTYCDGLLKVIAPDERIHSSFNQ
TETRTGRISSTEPNLQNIPVRTDIGRELRRFFVAKPGCVLIDADYSQIELRVLAHTANDK
NMIDAFRSGEDIHRATAAQVFHMPEEMVTPLMRSRAKAVNFGIVYGIGAFSLSKQLHITR
QEADAYIRDYLQHYSGINDYMQRMVEEAKQKGYAETIFGRRRYLPELKSSNFNLRSFGER
VARNMPIQGAAADIIKIAMIHVENRLHREGLSSQLILQVHDELIVEAPEAEAETAKALLQ
EEMENAAQLSVPLVADAKIGKTWYEAKA
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atggaattactcgtcctggacgggaacagcattttaaaccgcgccttttacggtattaag
cttctgaccaccaaagaaggcttatatacaaacggtatttatggctttatgactgtgctg
caaaaactggaaaaggaagtgcagccggacgcgactgccattgcctttgacctgaatgcg
cccaccttccgccacaaacgctatgctggatacaaggccaatcgccacggaatgccggag
gaactggcacaacagctgccaaacctcaaaaagctgctgacgctgctgggataccggctg
gtaacctgtgaaggatatgaggcggatgatattctgggcacgctgggggccgcctgcacc
cgccgcaaagatacctgtgtcattgccactggtgaccgtgacagtctgcagctggtcggg
ccgtatgtttccgtccggctggcccgcacaaaatacggacagccacaggtcaccctgtac
gatgaacaacgcgttatggaggaattcggtgtaacaccgccggaaatgattgaaatcaaa
gccctgcagggtgactcctccgactgtatccccggcgttaggggtatcgggccaaaaggt
gccggtcagctgatacagcagtaccactcgattgattatatttatgaccatttaaaagag
ctggatattcgcgagagtatgcggcaaaagttggaaaacggccgtgaaagtgcctacctg
tcccgcgagctggggaccatccgcaccgatgtgcccgttggcaccgatattcagggctat
gtccgtggcccggtacagaagcaggaagcgactgacctcatgcggcgtctggaattcttt
aaaatgctggaatccctggaccttggcgacaccgtggaacagtcgaaccctgccgaggca
gacacagcggttgcccttgtgctgcacccagatatagaacagctgtgcagtaaactgaaa
gccgacgggcatctgtatctcgcgggcatctttgagggccgcagccttcagcgcttgagc
gtggtacataagcaggccgtcttcctgctggagtccccgcaggaatgggaccgcgttttc
gcgcttcatctgccctgctgtacctttgacagcaagctgctctaccttgccgtggaatct
tccggcgcggaacttcttgtggaaacggacgctctgctggctgcctacctgctgaacccg
accgccaaaagctacagctatgcgcatctgtgtcaggaatacggcattccgctcccctcc
tctgttacaccgaaggggctgcagccgcaggacctaatgcgtatggacactctttctgcc
tgtgggcagtggcagtccttaccgcagttgtgcagtgtgctggaaaaaaatatttccgaa
gcgaaccaaaccaccctgctgcaaaacattgagcagccgctggcacgcatactggcccat
atggaacaagccggctttgccgtggacgccaagagaattgccgcctatggagatgtgctg
gctcaaaaagcagacgccctccaaaaacaaatttgggaagaagtcgggtacgaatttaac
ctgaacagccccaaacagctaggtgaggcactgttcgtcaagctgggcctgccacatggc
aaaaaaacaaaaagcggctggtccaccagcgccgctgttctggaaaatcttcggtatgac
aatccggtcgtggaattggtcctgcagtaccgcaccgtcagcaaactgaagtccacctac
tgcgacggcctgttgaaggtcattgcgccggacgaacgcattcactccagctttaaccaa
accgaaacacgcaccggccgcattagttccacggagccgaacctgcagaacattccggtc
cgtacggacattggccgtgagctgcgccgcttttttgtggcaaaacccggctgtgtgctg
attgacgccgattattcgcagattgagctgcgggtactggcgcataccgccaacgataaa
aacatgattgacgccttccgcagcggtgaggatattcaccgcgccaccgccgcacaggtg
ttccatatgccggaggaaatggtcacaccgctgatgcgcagccgtgcaaaagccgtcaac
ttcggtattgtatatggtatcggtgccttttctctctccaaacaactgcacatcactcgc
caggaagcagatgcctatattcgggattacctgcagcattacagcggtatcaacgactat
atgcagcgcatggtagaggaagccaaacagaaaggctacgccgaaacgattttcggccgg
cggcgatatctgccggaactgaaaagcagcaacttcaacctgcgctcctttggggaacgc
gtcgcacgcaatatgcctattcagggcgcggcggctgacattattaaaattgccatgatt
cacgtggaaaaccgccttcaccgagagggcctttcttcacagctgattctgcaggttcac
gatgaactgattgtcgaggcaccagaggcggaagcggaaacggccaaagcgctgctgcag
gaagaaatggagaacgctgcgcagctttctgtgccgctggtagcggacgcaaaaatcggc
aaaacgtggtacgaagcaaaagcttga
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