Rhizobium binae: J2J99_15475
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Entry
J2J99_15475 CDS
T07180
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rbq
Rhizobium binae
Pathway
rbq02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rbq00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
J2J99_15475 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rbq03021
]
J2J99_15475 (rpoD)
Transcription machinery [BR:
rbq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
J2J99_15475 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF5856
Relaxase_C
Phage_DsbA
DUF3106
Imm3
DUF4351
Motif
Other DBs
NCBI-ProteinID:
QSY81084
LinkDB
All DBs
Position
complement(3138558..3140615)
Genome browser
AA seq
685 aa
AA seq
DB search
MATKVKENEDAEVERDGASDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNAVLPSEEVTS
EQIEDTMSMLSDMGINVIEDEEAEEAGASGGGDDDDAGGDEDSDGGELAPSGGTALATAK
KKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQALII
WRDELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKTRRARSGDD
DITDVGGEGLPPEEEEEDEDESNLSLAAMEAELRPQVMETLDTIAETYKKLRKLQDQQVE
QRLSASGTLSSAQERRYKELKDELIKAVKSLSLNQNRIDALVEQLYDINKRLVSNEGRLL
RLAESYGVKRDSFLEQYQGAELDPNWMKSIGNLAARGWKEFAKGENTTIRDIRQEIQNLA
TETGISISEFRRIVHMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEG
NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSR
QMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNA
LLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIR
QIEAKALRKLKHPSRSRKLRSFLDS
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaaggtcaaagagaacgaagacgcggaagtcgaacgcgacggcgcaagcgac
ggccctcttctcgatctttccgacgacgcggtcaagaagatgatcaaggccgccaagaag
cgcggctatgtgacgatggatgagctgaacgccgttctgccgtccgaagaagtgacgtcc
gagcagatcgaagacaccatgtcgatgctgtcggacatgggcatcaacgtcatcgaggac
gaagaagccgaggaagcgggcgcttccggcggcggcgatgacgacgatgccggcggcgac
gaggacagcgacggcggcgaactcgcgccttccggcggcaccgcccttgcgaccgccaag
aagaaagaaccgaccgaccgtaccgacgatccggtgcgcatgtatctgcgtgagatgggc
tcggtggagctgctctcccgcgaaggcgaaatcgcgatcgccaagcgcatcgaggccggc
cgcgagacgatgatcgcaggcctctgcgagagcccgctgaccttccaggcgctgatcatc
tggcgcgacgaactcaacgaaggcacgacgctgctgcgcgagatcatcgatctcgaaacg
acctattccggtcccgaggccaaggctgcgccgcagttccagagccccgagaagatcgag
gccgaccgcaaggctgcggaagagaaggaaaagacccgccgcgcccgctccggtgacgac
gatatcaccgatgtcggcggcgaaggcctgcctcccgaagaggaggaagaggacgaggac
gaatccaacctctcgctggcggcgatggaagccgagcttcgcccgcaggtgatggagacg
ctggatacgatcgccgagacttacaagaagctgcgcaagctgcaggaccagcaggtcgag
cagcgcctgtcggcatccggcacgctgtcttcagcccaggagcgccgctacaaggagctc
aaggacgagctcatcaaggcggtcaagtcgctgtcgctcaaccagaaccgtatcgacgcc
ctcgtcgagcagctctacgacatcaacaagcgcctcgtttccaacgaaggccgcctgctg
cgcctggccgaatcctacggcgtcaagcgcgacagcttcctggagcagtatcagggcgcc
gagctcgatccgaactggatgaagtcgatcggcaatctggccgcccgcggctggaaggaa
ttcgccaagggcgagaacacgacgatccgcgacatccgccaggagatccagaatctggcg
accgagacgggcatttcgatctcggaattccgccgcatcgtgcacatggtgcagaagggc
gagcgcgaagcgcgcatcgccaagaaggaaatggtcgaagcgaaccttcgcctcgtcatt
tccatcgccaagaagtacacgaaccgcggcctgcagttcctcgacctcattcaggaaggc
aatatcggcctgatgaaggcggtcgacaagttcgaataccgccgcggctacaagttctcg
acctatgcgacctggtggatccgtcaggcgatcacccgctcgatcgccgaccaggcccgc
acgatccgcattccggtgcacatgatcgagacgatcaacaagatcgtccgcacctcgcgt
cagatgctgcacgagatcggccgcgagccgacgccggaagaactggccgaaaagctcgcc
atgccgctcgaaaaggtccgcaaggtcctgaagatcgccaaggaaccgatctcgctcgaa
acccctgtgggtgacgaagaggattcgcatctcggcgatttcatcgaggacaagaacgcg
ctgctgccgatcgacgccgccatccaggcgaacctgcgcgagacgacgacccgcgtcctc
gcctcactgacgccgcgcgaggaacgcgtgctgcgcatgcgcttcggcatcggcatgaac
accgaccatacgctcgaagaagtcggccagcagttctcggtcacccgcgaacgtatccgc
cagatcgaggcgaaggcgctgcgcaaactcaagcatccgagccgctccagaaagctgaga
agctttctggacagctaa
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