Rhizobium binae: J2J99_16500
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Entry
J2J99_16500 CDS
T07180
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rbq
Rhizobium binae
Pathway
rbq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J2J99_16500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbq03019
]
J2J99_16500
Enzymes [BR:
rbq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J2J99_16500
Messenger RNA biogenesis [BR:
rbq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J2J99_16500
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
NAT10_TcmA_helicase
AAA_22
Flavi_DEAD
Snf7
Motif
Other DBs
NCBI-ProteinID:
QSY84452
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All DBs
Position
3356967..3358655
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AA seq
562 aa
AA seq
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MVRSGHSRCGAPKGYALTNFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLQGRDLIG
LAQTGTGKTAAFGLPLIEKLLADERRPDNRTTRTLILAPTRELVNQIADNLKKFIRKSPL
RINVVVGGVSINKQQLQLEKGTDVLVATPGRLLDLVNRRAITLTTVRYLVLDEADQMLDL
GFVHDLRKIAKLVPKKRQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQYV
HFVAGKNDKTELLRKSLTENPDGRAIVFLRTKHGAEKLMKHLDNIGYSVASIHGNKSQGQ
RERALKAFRDGSIKTLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDG
IAIAFCAPDEAKLLRDIERLMGIDIAVASGEPPANINNSGPRRGNGNGNNRNRGGGQGRE
GQGREGHGRSEGRGDANRSEHRGSRQERRPRPERTSRNEDFRGQRRGEATPNLGPDNDLV
STSDFRPSAKPQRPAHHGAHANGEPSGHHRGNNRHAGRPARKQGEDRGPHQAQGGEPRRE
GNGGNRRGGSGSRNGGQRRERA
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgttccggccatagtcgttgtggcgccccgaaaggttatgccttgactaatttt
gaatcgcttggtgtctccaagccgatcgtcgccaccttgttccagctcggcatcgaaacg
ccgacgccgatccaggaacaggccatcccccttctcctccagggccgagatctgattggc
cttgcccagaccggcaccggcaagaccgccgccttcggcctgccgctcatcgaaaagctg
cttgccgacgagcgtcgcccagacaaccgcacgacgcggacgcttatcctggcgccgacc
cgcgaactggtgaaccagatcgccgacaacctgaagaaattcatccgcaaatcgccgctg
cgcatcaacgtcgtcgttggcggcgtctcgatcaacaaacagcagcttcagctggaaaaa
ggcaccgatgttctggtcgctacgcccggccgcctgcttgatctcgtcaatcgtcgcgcc
atcaccctgaccacggtgcgctatctcgtgcttgatgaagccgaccagatgctcgacctc
ggcttcgtgcacgatctgcggaagatcgccaagctggtgccgaagaagcgccagaccatg
ctgttttcggccaccatgccgaaggctatcgccgatctcgccggcgaatatctcgtcgat
cctgtgaaggttgaagtcacgcctccgggcaaggctgccgacaaggtcgagcagtatgtc
catttcgtcgccggcaagaacgacaagacggaactgttgcgcaagtcgctgaccgaaaat
cccgacggccgcgccatcgtcttcctgcgcaccaagcatggcgcggagaagctgatgaag
cacctcgacaatatcggctattccgtcgcctcgatccacggcaataagagccagggccag
cgcgagcgggcgctgaaggccttccgtgacggcagcatcaagaccctgatcgccaccgac
gttgccgcccgcggcatcgatatcccggccgtcagccacgtctataactacgacctgccc
gaggtgcccgacgcctatgtccatcgcatcggccgcaccgcgcgcgccggccgcgacggc
atcgcgattgccttctgcgcccccgacgaagccaagctgctgcgtgacatcgagcgcctg
atgggcatcgacatcgcagtcgcaagcggcgaaccgccggccaatatcaacaatagcggc
ccccgccgcggcaacggcaatggcaacaaccgcaaccgcggtggcggccaaggtcgcgaa
ggccaaggtcgcgaaggtcatggccgcagcgaaggccgtggcgacgcgaaccgctcagag
catcgcggcagccgtcaggaacgccgcccgcgtcccgaacgcacaagccgcaacgaggat
ttccgcggccagcgccgcggcgaggccaccccgaatcttggccccgataacgatctggtc
tcgacctccgacttccgcccctcggcaaagccgcagcgtcctgcccatcacggcgcccac
gccaatggcgaaccgagtgggcatcaccgcggcaataaccgccacgccggtcgcccggcc
cgaaagcaaggcgaagaccgcggcccgcaccaggcccagggcggcgaaccccgccgtgag
ggcaatggtggcaaccgccgcggcggctccggctcccgcaatggtggccagcgccgcgaa
cgcgcctaa
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