Rhizobium binae: J2J99_20130
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Entry
J2J99_20130 CDS
T07180
Symbol
lysA
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
rbq
Rhizobium binae
Pathway
rbq00300
Lysine biosynthesis
rbq00470
D-Amino acid metabolism
rbq01100
Metabolic pathways
rbq01110
Biosynthesis of secondary metabolites
rbq01120
Microbial metabolism in diverse environments
rbq01230
Biosynthesis of amino acids
Module
rbq_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
rbq00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
J2J99_20130 (lysA)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
J2J99_20130 (lysA)
Enzymes [BR:
rbq01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
J2J99_20130 (lysA)
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Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
QSY81911
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All DBs
Position
4127996..4129264
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AA seq
422 aa
AA seq
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MNHFEYRHGILHAENVPVPEIAKAVGTPFYVYSTATLERHYRVFSEAFADMDSMVCYAMK
ANSNQAVLKTLGRLGAGIDVVSEGELRRALAADIPASRIMFSGVGKTPSEMDFALEAGIY
CFNVESEPELEILNQRAVSAGKKAPVSFRINPDVDAKTHSKISTGKKENKFGISWERARA
IYAHAAKLPGIEVTGIDMHIGSQITELQPFDDAFKLLRDLVATLRADGHTIDHVDIGGGL
GVPYKDDNNPPPLPDAYAAIVKNQLRDLNCKVITEPGRLIVGNAGIFVTEVLYVKDGGDK
TFVIVDGAMNDLIRPTLYEAYHEIRPVTISAANAPRIRADVVGPVCETGDYLALDREMSM
PKPGDLLAVSTAGAYGAVQAGTYNSRLLVPEVLVKGSDFHAIRPRRTYAELISLDSVPAW
LD
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
gtgaaccatttcgagtaccgccacggcatccttcacgccgagaacgttcccgttcccgag
atcgccaaggcggtcggcacgccgttctacgtctattccaccgccaccctggaacgccat
taccgggtcttctccgaagccttcgcggatatggactcgatggtctgctacgcgatgaag
gcgaattcgaaccaggcggtgctgaagactctgggtcgcctcggcgccggcatcgacgtc
gtctcggaaggggaactgcgccgcgcgctcgcagccgacattccggcaagccgcatcatg
ttttcaggcgtcgggaagactccgtccgagatggatttcgcgctcgaggccggcatctac
tgcttcaacgtcgaatccgaacccgagctcgaaatcctcaaccagcgcgccgtcagcgcc
ggaaagaaggcccccgtctccttccgcatcaacccggatgtcgacgccaagacgcattcg
aagatctcgaccggcaagaaggaaaacaagttcggcatctcctgggagcgtgcccgcgcg
atctatgcccatgccgccaagctgcccggcatcgaggtcaccggcatcgacatgcatatc
ggcagccagatcaccgagctgcagcctttcgacgacgctttcaagctgctgcgcgacctt
gtcgcgacgctccgcgccgatggccacacgatcgatcacgtcgacatcggcggcggcctt
ggcgtcccctataaggacgacaacaatccgccgccgctgccggatgcctatgcggcgatc
gtcaagaaccagctgcgcgatctgaactgcaaggtcatcaccgagcccggccgcctgatt
gtcggcaatgccggtattttcgtgaccgaagtgctttatgtgaaggacggcggcgacaag
accttcgtcatcgtcgacggcgcgatgaatgatctcatccgcccgacgctctacgaggcc
tatcacgaaatccgcccggtgacgatttcggcggcgaacgcgccgcgtatccgcgccgac
gtcgtcggccccgtctgtgagaccggcgactatctggcgctcgatcgcgaaatgtcgatg
ccaaagcctggtgatctgctggccgtcagcaccgccggcgcctatggcgccgtccaggcc
ggcacctataacagccgcctgctggtccccgaagttctggtcaagggcagcgatttccat
gcgatacgaccgcgcagaacctatgccgagctgatcagcctcgattcggttccggcttgg
ctcgactga
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