KEGG   Rhodobiaceae bacterium SMS8: RHODOSMS8_00725
Entry
RHODOSMS8_00725   CDS       T05596                                 
Symbol
nrdJ
Name
(GenBank) vitamin B12-dependent ribonucleotide reductase
  KO
K00525  ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
Organism
rbs  Rhodobiaceae bacterium SMS8
Pathway
rbs00230  Purine metabolism
rbs00240  Pyrimidine metabolism
rbs01100  Metabolic pathways
rbs01232  Nucleotide metabolism
Module
rbs_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
rbs_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP
Brite
KEGG Orthology (KO) [BR:rbs00001]
 09100 Metabolism
  09104 Nucleotide metabolism
   00230 Purine metabolism
    RHODOSMS8_00725 (nrdJ)
   00240 Pyrimidine metabolism
    RHODOSMS8_00725 (nrdJ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rbs03400]
    RHODOSMS8_00725 (nrdJ)
Enzymes [BR:rbs01000]
 1. Oxidoreductases
  1.17  Acting on CH or CH2 groups
   1.17.4  With a disulfide as acceptor
    1.17.4.1  ribonucleoside-diphosphate reductase
     RHODOSMS8_00725 (nrdJ)
DNA repair and recombination proteins [BR:rbs03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   Modulation of nucleotide pools
    RHODOSMS8_00725 (nrdJ)
SSDB
Motif
Pfam: Ribonuc_red_lgC Ribonuc_red_2_N TSCPD TACO1_YebC_N
Other DBs
NCBI-ProteinID: AWZ00278
LinkDB
Position
complement(733854..737645)
AA seq 1263 aa
MRIQRCFTDEAKSPYEGIEFRTTTSEIRNPDGTIVFRLDDIAVPADWSQVAADILAQKYF
RKAGVPAALRPVKDENIPTWLWAHEADEPRLDDMPEGERFGPEKDARQVFDRLAGTWTYW
GWKGGYFDTEADARAFFDEMRFMLATQIAAPNSPQWFNTGLNWAYGIDGPAQGHHYVDFQ
SGELTVSDSAYEHPQPHACFIQGIDDDLVNENGIMDLWVREARLFKFGSGTGSNFSHLRG
ESEPLSGGGKSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDIEHFINWKVIE
EQKVAALVTGSKINEKFLGAVMRACVNCEGPEGDCFDPKKNPALRRAIIAAREAMIPENY
VQRVIQFAKQGFKEIEFRTYDTDWDSDAYLTVSGQNSNNTVRVTDDFLNAVESDSDWHLI
NRTDSAIAKTLDARELWDQIGQAAWQSADPGIQYHTTINDWHTCPESGEIRASNPCSEYM
FLDNTACNLASINLMQFRQASGRFDVEAFEHVAKLWTVVLEISVLMAQFPSKEIAELSYK
FRTLGLGFANIGGLLMSQGIAYDSKEARSICGAISAIMTGVSYATSAQMAKELGAFPGYG
ENENHMLRVMRNHRAAAHGEATAYEDLSTSPVPLDAPNCPQGDLVEHARAAWDLAVSMGE
KYGYRNAQSTVVAPTGTIGLVMDCDTTGIEPDFALVKFKKLAGGGYFKIINRAVPQALRT
LGYKPEQIEEIVGYAVGHGTLNGAPGVNHETLTGKGFTQEALELVEDSLATAFDIRFAFN
KYSLGEEFCVEALGLDAGAMDEIDFDMLAALGFSADEIEAANLHVCGAMTLEGAPGLAEA
HLPVFDCANPCGRTGKRFLSVESHIRMMAASQPFISGAISKTINMPNSATVEDCKESYML
SWRLGLKANALYRDGSKLSQPLNAQLVDDDDVDLEMADDAIAAAPTLIEQPAAAQAATLA
QKLATKTIEQARTASTNSLGAAMVDGERGERAKLPDRRKGYTQKAVVGGHKVYLRTGEYE
DGTIGEIFIDMHKEGAAFRSLMNNFAIAISLGMQYGVPLEEYVEAFTFTRFEPAGLVQGN
DTIKNATSILDYVFRELAVSYLGRHDLGHVDPADLMPDAMGDGEGEGKLPPKPMPATAIA
SPGFARNTQLANLYVVRGGAATVRAGEVAEALTGQTEAEPETMLMTETEIVATEQIAVAT
TVQAGSGHTRAGNTSISRTMSAAVEARMKGYEGEACSECGNFTMVRNGTCLKCDTCGGTS
GCS
NT seq 3792 nt   +upstreamnt  +downstreamnt
atgcgcatacaacggtgtttcacagacgaagccaaatcgccttatgaggggatcgaattc
cgcacgacgacgagcgagatccgaaaccccgacggcacgattgtgtttcgacttgatgac
atcgcagtgccggcagactggagccaggttgcggccgatattctggcgcagaagtacttc
cgtaaagctggtgtgcctgcagcgttgcgcccagtcaaagatgaaaacatcccaacctgg
ctttgggctcatgaagcagacgaaccccgtctggatgacatgccagaaggcgagcgcttt
ggcccagaaaaagacgcccgccaggtgtttgaccggttggctggcacctggacctattgg
ggctggaaaggtggctatttcgacaccgaagcagacgcacgtgctttcttcgatgagatg
cgctttatgctcgcgacccagattgctgcgccaaactccccacaatggttcaacacaggc
cttaactgggcctatggcatcgacggtccggcacagggccatcactatgtggacttccaa
agtggcgagctgacggtaagtgacagcgcctatgaacatccgcagccccacgcctgcttc
attcaaggcatcgatgatgacctcgtgaacgaaaacggcatcatggacttgtgggttcgt
gaagcccgtctcttcaaattcggatctgggaccggctccaacttctcgcacctgcgcggc
gagagcgaacctctgtcgggcggtgggaaatcctccggcctcatgtccttcctgaaaatc
ggggaccgggctgcaggggccatcaaatccggcggcacaacgcggcgggctgccaaaatg
gtggtggttgatgtggaccaccccgacattgagcacttcatcaactggaaggtgatcgaa
gagcagaaggtcgccgcactcgtcaccggttcaaaaatcaatgagaaattcctcggcgcc
gtgatgcgtgcctgcgtcaattgcgaaggtcccgaaggcgactgtttcgatccgaagaaa
aaccctgcccttcgacgcgccatcattgctgcgcgcgaagccatgatcccggaaaactat
gttcagcgggttattcagttcgccaaacagggctttaaagaaattgagttccgcacctat
gacacagattgggattcagatgcctatctcacggtgtcaggccagaactccaacaacacg
gtccgggtcaccgatgacttcttgaacgcagttgagtcagacagcgactggcatctgatc
aacagaacagacagtgctattgccaagacgctcgacgcgcgggaactttgggaccagatc
ggccaggccgcatggcagagcgctgatcctgggatccagtaccacacaacgatcaatgac
tggcacacctgtccggaaagcggtgagatccgcgcgagcaatccgtgctcggaatatatg
ttcctggacaatacagcatgcaaccttgcgtccattaatctgatgcagttccgtcaggcc
tctggacgctttgacgttgaagcatttgaacatgtggccaaactctggaccgtggtgctg
gaaatctctgtcctgatggcgcagttcccatcaaaagaaatcgcagaactttcctacaag
ttccgcacactgggcttgggctttgccaatattggtggcctgcttatgtcccagggcatc
gcctatgactcaaaagaagcccgttcgatctgtggtgcgatttccgcgatcatgaccggc
gtctcctatgccacctcagcgcagatggcgaaggaactgggtgccttcccgggttatggc
gaaaacgagaaccatatgctccgcgtcatgcgcaaccatcgcgcggcggctcatggggaa
gccacagcctatgaagatctttcgaccagtcctgtgccgcttgatgcgccaaactgccca
cagggtgaccttgtggaacatgcgcgggctgcctgggatcttgcggtctccatgggcgag
aaatatggctaccgcaacgcccagtcgacagtagttgcgcccacgggcacgatcggtctg
gtgatggattgcgacacgaccggtattgagcctgactttgcgctggtgaagttcaagaag
ctcgccggtggcggctattttaaaatcatcaaccgggctgtgcctcaggcgctgcggaca
ctcggctacaagcccgagcagatcgaagaaattgtcggctatgcagtaggacacggcacc
ctgaatggcgcgccaggtgtgaaccatgaaacgctgacaggcaagggcttcacccaggag
gcgcttgagcttgttgaagactcgctcgcgacggccttcgacattcgatttgcgttcaac
aaatattcgcttggtgaggagttctgtgtcgaggcgctcggccttgatgcaggcgcaatg
gatgagattgatttcgacatgctggctgcccttggcttcagcgcggacgaaattgaagct
gcaaacctgcatgtttgtggcgcgatgacgttggagggtgcgcccggcctcgcagaggcg
caccttcccgtcttcgattgcgcaaacccctgtggtcggaccggcaagcgcttcctctcc
gtggaaagccacatccgtatgatggcggcgtcacagcctttcatctccggcgcgatctca
aaaacgatcaacatgccgaattctgccacagtggaagattgcaaagaaagctacatgctg
tcctggcggctcggcctcaaagccaatgcgctttatcgcgatggctcgaaactctcccag
ccactgaatgcccagctcgtggacgatgacgatgtggatctggagatggcagacgacgcg
atcgctgccgcaccaaccctgatcgaacaacccgcagccgcccaggctgcgacactggcg
cagaagcttgccaccaaaacaattgaacaggcgcgcacggcgtcaacaaactcgcttggt
gcggcaatggtcgatggagaacgcggtgaacgggcgaaactccccgaccgtcgcaaaggc
tatacgcaaaaggccgttgtcggtgggcacaaagtgtacctgcgcacgggcgaatatgaa
gacggcacgatcggtgaaatcttcatcgacatgcacaaggaaggcgcggccttccggtcg
ctcatgaataatttcgccatcgcgatttctttgggcatgcaatatggcgtgccgcttgaa
gaatatgtggaggccttcaccttcacccgcttcgagcctgctggccttgtgcagggcaat
gacacgattaagaacgcgacctcgatcctcgactatgtgttccgggagctcgcggtgtcc
tatctcggacgccatgacctcggccatgtggacccagcagacctgatgcccgacgccatg
ggcgatggagagggtgaaggcaaactgcctccgaagccgatgcccgcaactgcgatcgca
tcacctggatttgcgcggaacacgcagctcgcaaatctttatgtggtgcgcggtggtgcc
gccacggtgcgcgccggcgaggttgctgaagccctcacagggcaaacagaggcagagcct
gagaccatgctgatgacggagactgaaattgtcgccacagagcagattgccgtggcaacg
actgttcaggccggatccggacacacaagggcgggcaacacgtctatctcacggaccatg
tccgccgcagtggaagcacgcatgaaaggctatgagggagaggcgtgcagcgaatgcggc
aacttcaccatggtgcggaacggcacctgccttaagtgtgacacttgcggcggcacgagc
ggctgtagctga

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