Rhodobiaceae bacterium SMS8: RHODOSMS8_00865
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Entry
RHODOSMS8_00865 CDS
T05596
Symbol
rnjA
Name
(GenBank) ribonuclease J1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rbs
Rhodobiaceae bacterium SMS8
Pathway
rbs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RHODOSMS8_00865 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbs03019
]
RHODOSMS8_00865 (rnjA)
Messenger RNA biogenesis [BR:
rbs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RHODOSMS8_00865 (rnjA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
Lactamase_B_2
RNase_J_C
Lactamase_B
Lactamase_B_6
Cuticle_1
Motif
Other DBs
NCBI-ProteinID:
AWZ00415
LinkDB
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Position
880578..882257
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AA seq
559 aa
AA seq
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MNHNSPDNAELLFVPLGGTGEIGMNLNLYGFGTEEDRKWIMVDLGVTFSDGRTPGVDVIM
PDPTFIEEHRQDLIAIVLTHAHEDHIGAVAHLWPKLRCPVYATPFTAELVKGKLIEAGIE
QEVPLNIVDLGARFDLGPFDIEFVTLTHSIPEPNALAIRTSLGTVMHTGDWKIDPGPVIG
ETLDSKRLAEIGEEGVRAIVCDSTNVFTPGEAGSEADVGSSLTELIGGLDGRVVVTTFAS
NVARLESVIRAAEANGRHVVLAGRSMFRVIAAARGTGHLKNLPPFIEAADAGYLPKDKVL
FLCTGSQGEPRAALARIAADAHRDIVLEEGDTVIFSSRIIPGNDVAIFEMQNDLARAGVR
VITEKDHFVHVSGHPCRDELTAMYQWIKPELAIPVHGEARHLLEHAALAKELQVPETLVI
QNGDMVRLAPGAAEVVDEVPSGRVVMDGDVLVPSWDAGIQERRRLAFAGAVFVSVALNEK
GAVQGDPEIRLIGLPERDNYGVRFDEHAYDALNNALDHLPQRKRKDEAQVSEYLRRAVRG
AIRKEWGKKAAVEVIVTRV
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacaattcacctgacaatgctgagctgcttttcgttcccttagggggcacaggc
gagatcggtatgaatcttaacctctacggatttgggacggaggaagaccgcaagtggatc
atggtggatctcggcgtcaccttttctgacgggcgcacgccgggcgtggacgtcatcatg
cccgatccgaccttcattgaagagcatcggcaggacctgattgccatagttctgacccac
gcccatgaagatcatatcggggctgttgcccacctctggcctaagcttcggtgcccggtc
tatgcgacaccgttcactgcagaactggtgaagggcaagctgattgaagcggggatcgag
caggaggtcccactcaacattgtcgatttgggcgcccggtttgatcttggaccgtttgat
atcgaattcgtgacgctgacccattccataccagaacccaatgcactggccatccggacc
tcgcttggtaccgtcatgcatacaggcgattggaaaatcgacccgggcccggtgataggg
gaaactttggacagcaaacgcctggccgaaatcggcgaagagggcgtacgcgcaattgtc
tgcgacagcaccaatgtgtttaccccgggcgaggcgggttctgaagctgatgtcgggagc
agtctgacagagctaattggtgggctcgacgggcgagtggtggtcacgacctttgcctcg
aatgtcgcccggctggaaagtgtcattcgcgcggcggaggcgaacgggcggcatgtcgtc
ctggcgggccggtccatgtttcgtgtgatcgcggcagcgcgtggtacaggacacctcaaa
aacctgccgcctttcattgaggccgccgacgccggctacctgccaaaagacaaagtattg
tttctgtgtaccggctcccaaggtgagccacgtgcagcgcttgccaggatcgccgctgat
gcgcatcgtgacatcgtcctggaagaaggcgacacggtcatcttctcttcacggattatc
cccgggaatgatgtcgccatcttcgagatgcaaaatgacctcgcgcgcgcaggcgtcagg
gtgattacggagaaagatcattttgtgcatgtgtcgggacatccctgtcgcgatgaactg
acagctatgtatcagtggatcaaacctgaactagcaatccctgttcatggcgaagctcgg
catttgctggagcacgcagcgttggccaaggagcttcaggtgcctgagacattggttatc
cagaatggggatatggtcaggctcgcccccggggctgctgaagtggtggatgaggtgccg
tcaggccgggtcgtaatggatggcgatgttctggtcccgtcctgggatgccggcattcag
gaacgccgccgcttagcgtttgctggtgctgtgtttgtgtcggtagcgctcaatgaaaag
ggtgctgtacagggagatcctgaaatccgtctgatcggattgccagagcgagataattat
ggcgtgcgttttgatgaacacgcctatgacgctttgaacaatgccctggatcatttgccg
cagcggaagcggaaagatgaggcccaggtgagcgagtatctgcgccgggccgttcgcggc
gctatccgcaaggaatggggcaaaaaagctgctgtcgaagtaatcgttacaagggtctag
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