Rhodobiaceae bacterium SMS8: RHODOSMS8_01189
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Entry
RHODOSMS8_01189 CDS
T05596
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rbs
Rhodobiaceae bacterium SMS8
Pathway
rbs03410
Base excision repair
rbs03430
Mismatch repair
rbs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rbs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RHODOSMS8_01189 (recJ)
03430 Mismatch repair
RHODOSMS8_01189 (recJ)
03440 Homologous recombination
RHODOSMS8_01189 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rbs03400
]
RHODOSMS8_01189 (recJ)
DNA repair and recombination proteins [BR:
rbs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RHODOSMS8_01189 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RHODOSMS8_01189 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RHODOSMS8_01189 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AWZ00732
UniProt:
A0A2Z4UIC7
LinkDB
All DBs
Position
complement(1189290..1191089)
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AA seq
599 aa
AA seq
DB search
MEYEPDSGFLGVGRSLTSRRWIPRLENDRLALQLAQQADVPELLARVLAARGVTADACEQ
HLNPTLRSYLPDPSIVEDMDKAAERITKAVVDGEQVAVFGDYDVDGATSSALLKLYFEAI
GAPLRIYIPDRIKEGYGPNAPAFLKLKDLGVSLIITVDCGTMAHKPLGVAKERGLDVVVV
DHHQAEPLLPPAVAVVNPNRLDDTSGLGQLAAVGVTFLLLIALNRTLRSAGWFEGDREEP
NLLDMLDIAALGTVCDVVPLTGLNRAIVTQGLKVMSLRKNKGLAALGDVAKMEGAPGTYH
AGFLLGPRVNAGGRVGRADLGARLLTTHDGAEAHEIALALDTYNRERQAIEALVLEQAIE
QVDAMLAHSRANQPPPLIIASGAGWHPGVIGIVASRIKDKYDRPTFVVAIDSKGEGKGSG
RSVPGVDLGRAVTAALEAGLLVNGGGHAMAAGLTVREGKLDELHEFLNSRIASDVMAAGE
ERQLKLDGALTTDAASREMFEMLEKAGPYGAGNPEPRFAVPRVRIVRADRVGQNHVRCIL
AGDEGGRLKGIAFRAADSELGESLLNSGGAVFHVAGRLRADDWQGRRGVQLQIDDAARL
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
ttggagtacgagccggatagcgggttcctgggtgtcggaaggtctttgaccagccgtcgt
tggatccctcggcttgaaaatgatcggttggccttgcaacttgctcagcaagcagatgtt
cctgagcttcttgcgcgggttcttgcggcgcgtggtgttaccgcagacgcctgcgaacaa
catctcaacccgaccttgcgatcttacctgccagacccgtccatcgttgaagatatggat
aaggctgctgagcgcatcaccaaggcggttgtcgatggtgagcaagtggctgtttttggc
gactatgacgtggatggggctacctcatcggccctcctgaagctctactttgaagcgatt
ggcgcccctttgcggatttacattcccgaccgcatcaaggaaggctatggcccaaacgca
cccgccttcctcaagctcaaggatttaggcgtatcgctcattattacggttgattgcggc
accatggcgcacaagcctcttggtgttgctaaggaacgcgggttggatgtggtcgttgtt
gaccaccatcaggctgagcctttgttgccaccggcggtcgcagtggtgaatcccaacaga
ctggatgacacgagcggtcttggacagctcgctgcggttggtgtgacgtttcttctattg
attgctctaaacagaacgctgcgctctgcgggatggtttgagggggatcgggaagagccc
aacctcctggacatgctcgacattgccgcccttggaaccgtttgtgatgtggtgccgttg
acgggcctcaaccgagcgattgtgacccaaggcttgaaagtcatgagcttgcgcaaaaac
aagggtcttgcggctctgggtgatgtggcaaagatggaaggtgcgcctggcacctatcac
gcaggttttctgctcggtcctcgtgtaaatgctggcggacgtgttggccgcgctgacctg
ggcgcgcgtctcctcacaacgcatgacggcgctgaagcccatgaaattgcgctcgcgctc
gatacatacaaccgtgagcgccaggcgattgaagccttggtgttggaacaagcgatcgaa
caggttgatgccatgctggctcattcgcgtgccaatcagccgccgccccttatcattgcg
tcgggagctggatggcatcctggtgtcattgggatcgtggcgagccgcataaaagacaaa
tatgaccgccccacctttgttgttgccatcgatagcaagggtgaggggaagggatctggc
aggtctgtccccggtgttgacctcgggcgcgcagtgacagcggcccttgaggcggggctt
ctggtcaatgggggcggccatgctatggcagctggtcttacagtccgggaaggcaagctg
gatgaacttcatgagtttctgaacagccgcattgcatcggatgtgatggcggctggtgaa
gaaagacagttgaaactggatggcgcgctgacgacagatgcggcgtcgcgtgagatgttt
gaaatgctcgaaaaagctgggccttacggcgcggggaacccggaaccgcgatttgcggtg
ccgagggtgcggattgtgcgggcagatcgggtcggacagaatcatgtgcgctgtatcctg
gcgggcgacgagggcgggcgattgaagggaatcgcttttagagcggctgattcagagctt
ggagagagccttttgaacagtggtggggctgttttccatgtcgcaggacgcctccgggcg
gatgattggcagggacgaagaggcgtccagttgcaaattgatgacgctgctcggctctga
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