Rhodobiaceae bacterium SMS8: RHODOSMS8_01430
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Entry
RHODOSMS8_01430 CDS
T05596
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rbs
Rhodobiaceae bacterium SMS8
Pathway
rbs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rbs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RHODOSMS8_01430 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rbs03021
]
RHODOSMS8_01430 (rpoB)
03400 DNA repair and recombination proteins [BR:
rbs03400
]
RHODOSMS8_01430 (rpoB)
Enzymes [BR:
rbs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RHODOSMS8_01430 (rpoB)
Transcription machinery [BR:
rbs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RHODOSMS8_01430 (rpoB)
DNA repair and recombination proteins [BR:
rbs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RHODOSMS8_01430 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AWZ00970
LinkDB
All DBs
Position
complement(1414007..1418098)
Genome browser
AA seq
1363 aa
AA seq
DB search
MTQSFTGRKRVRKSFGRIPQVAEMPNLIEVQKYSYDQFLQVDRQSDGARLDQGLQSVFGS
VFPISDFSETAMLEFVDYEFEHPKYDVEECQQRDMTFAAPLKVTLRLIVFEVDEDTGAKS
VKDIKEQDVYMGDMPFMTTNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFA
ARVIPYRGSWLDFEFDAKDIVHVRIDRRRKLPVTTLLYALGLDSEDILNTFYGHVKYTKT
KDGWKLPFDPERYRGFKPEHDLVNAKGGVVVVEAGRKMTPRLSRKLAEEGLKELLVQDAE
VIGRYMAEELVNLETGEIFAEAGEEITEELLETLVDAGASEINTLDIDHVNTGAFIRNTL
AVDKATDREQALYDIYRVMRPGEPPTLDTADALFHSLFFDPERYDLSAVGRVKMNMRLNL
DAEDTVRVLRKEDIIEVIRTIVGLRDGRGEIDDIDNLGNRRVRSVGELMENQYRIGLLRM
ERAIKERMSSVDIDTVMPHDLINAKPVAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLS
ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPY
RRVVDGKVTDDTVYLSAMEEARYRVAQANVPIGADGKLQDDLLNCRIDGDFEMVPPEQVD
LIDVSPKQIVSVAAALIPFLENDDANRALMGSNMQRQAVPLVKAEAPFVGTGMEEIVARD
SGAAIAARRTGVVDQVDATRIVIRATEETDPGKPGVDIYNLRKFQRSNQNTCINQRPLVR
VGDRINGGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILISERIVRDDVFTSIH
LEEFEVMARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAEVGPSDILVGKITPKGE
SPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVTGTVVEVRVFNRHGVDKDERAMSIERDE
IERLAKDRDDELAILERNVYGRLQEILTGKEVVSGPADLAAGAKVSKTDLDGLSKGQWWQ
IAVGNEKAMSEIEALKRQYDESKARLEARFEDKVDKLQRGDELPPGVMKMVKVFVAVKRK
LQPGDKMAGRHGNKGVISRIVPVEDMPHLEDGTQVDVVLNPLGVPSRMNVGQILETHLGW
ASHGIGRKVTQALEIYQRENSTAALRETLDKVYEGDETYASLDEPALIEMAGNLRNGVPF
ATPVFDGAHEPDVVTQLENAGLGHSGQVTLYDGRTGETFDRDVTVGYIYMLKLHHLVDDK
IHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRT
KVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELIDRPAS
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
atgacgcagtcatttactggtcggaagcgggttcgtaaatcatttggacgtatcccccag
gtggcagagatgccaaacctgatcgaggttcaaaaatattcttatgaccagttcttgcag
gttgatcggcagtccgatggggcgcgtcttgatcaaggtctgcagtctgtattcgggtcg
gtcttcccgattagcgatttttcagaaaccgctatgctggaatttgtcgactatgaattc
gagcatccaaaatatgacgtagaagagtgtcagcagcgcgacatgacgttcgcagcgccg
ctcaaggtaacattgcggttgatcgtgtttgaagtggatgaagacacaggcgccaagtct
gttaaagatatcaaagagcaagacgtctatatgggcgacatgcctttcatgacaacgaac
ggtacgtttgtcgtcaatggcacggagcgtgtgattgtttcgcagatgcatcgtagccca
ggcgtgttctttgaccatgataagggcaagactcactcgtctggtaagcttctgttcgca
gctcgcgtcattccttaccgtggttcgtggctcgactttgagtttgatgcaaaagacatt
gttcatgtccgcatcgaccgccgccggaaacttcccgttacgacgttgctctatgcgctt
ggcctcgactctgaggacattctcaatacgttctacggccatgtgaaatacacgaagacc
aaagacggttggaaacttccgtttgatcctgagcgctatcgcggctttaagcccgagcat
gacttggtcaacgccaaaggcggtgtagtggttgtcgaggcgggccgcaagatgactccg
cggctttctcgcaagcttgctgaagaaggtctgaaggagcttctcgttcaggacgctgag
gttatcggccgatacatggctgaagagctcgtcaaccttgaaacaggtgagatctttgct
gaagcaggtgaggaaatcacggaagagctgctcgaaactctcgttgatgctggtgcgagc
gaaatcaatacgctcgatattgaccatgtgaacacgggtgcctttatccgcaacactttg
gctgtcgacaaggccacagacagagagcaggcgctttacgatatctatcgtgtgatgcgt
cctggtgaaccgccgacccttgatacggccgatgcgctgttccacagtctgttcttcgat
cccgagcgttatgatctgtctgctgttggtcgcgtgaagatgaacatgcgcctcaacctt
gatgcggaagacactgttcgtgtgctgcgcaaagaagacatcatcgaagtgatccggacg
atcgtcggtctgcgtgatggccgtggcgaaattgatgacatcgataatcttggcaaccgg
cgtgtgcgttcggttggcgagctgatggaaaaccagtaccgcatcggtctgcttcgcatg
gagcgcgcgatcaaagaacggatgagctctgtcgacatcgacacagtcatgccgcatgac
ctgatcaacgcgaaaccagttgcggcggctgttcgtgagttttttggctcatcgcagctg
tcacagtttatggaccaaacaaatccgctctcagagattacgcataagcgccgtctctca
gcacttgggccgggtggtctgacccgtgaacgcgctggctttgaagtccgtgacgtgcat
ccaactcactatggtcgtatctgtccgattgagactcctgaaggaccaaatattggtctg
atcaactcgctcgcgacttttgcacgcgttaataagtatggttttatcgaaagcccatac
cgacgtgtggttgatggcaaggtgactgacgacacggtttacctgtcggccatggaagaa
gcccgctaccgggttgctcaagcgaatgttcccatcggtgcggacggcaagcttcaggat
gaccttctgaactgccgtatcgacggtgacttcgagatggtcccacctgagcaagttgac
ctgatcgatgtgtcgccaaaacagattgtgtctgttgcggcagctctcattccattcctt
gaaaacgatgacgcgaaccgcgctctcatgggctcgaacatgcagcgtcaggcggtacct
ttggtgaaagctgaagcaccgttcgttggtacgggtatggaagagatcgtggcacgcgac
agtggtgcggcgattgcggcccgccggaccggtgttgtcgaccaggtggatgcgacacgt
atcgttatccgtgcaaccgaagaaacagaccctggcaagcctggggttgatatctacaat
ctgcgcaagttccagcgctcgaaccaaaacacctgcatcaaccagcgtccgctggtgcgg
gtgggcgaccggatcaatggtggcgacatcattgcagatggtccttccacagatctcggg
gaactggctcttgggcggaacgtgctcgtcgcgttcatgccttggaatggctacaacttt
gaggattccatcctgatctctgaacggatcgtacgggatgatgtgttcacctctattcac
ctcgaagagttcgaagtgatggcgcgtgatacgaagcttgggcctgaagagattacgcgg
gacattccaaacgttggtgaggaagcgcttcgcaacctcgatgaggccggcatcgtttat
atcggtgctgaagttggtccatctgacattctcgtcggtaagatcacgccgaagggtgag
agcccaatgacgccggaagaaaaacttctgcgcgccatcttcggtgagaaggcatctgat
gttcgtgatacatcgcttcgtctgccccctggtgtgacagggacggttgttgaggttcgt
gtgtttaaccgccacggcgtcgacaaggatgaacgcgccatgtcgattgagcgagacgaa
atcgaacgtcttgcaaaagaccgagatgacgaactcgcgatccttgagcggaacgtttat
ggccgtcttcaggaaatcctgacaggcaaggaagtggtatcaggaccagctgatcttgca
gccggcgccaaagtttcgaagacggacctggatggtttgtctaaggggcagtggtggcag
attgcggttggtaatgaaaaagccatgtccgaaatcgaagcactgaagcgtcagtatgac
gagtccaaagcgcgcctcgaagcacgctttgaggacaaggtcgacaagcttcagcgtggt
gatgagttgccacctggtgtcatgaaaatggtcaaagtctttgttgctgtgaagcgtaag
cttcaacctggtgacaagatggctggtcgtcacggcaataagggtgtgatttctcgcatc
gtaccggtggaagacatgcctcacctggaagatggaacacaggttgatgtcgtgctcaat
cctctcggggtgccgagccgaatgaatgtcgggcagatccttgaaacccatctgggttgg
gcctcgcacggtattggtcggaaggtgacgcaagcgctggaaatctatcagcgtgaaaac
agcaccgcggcgctgcgtgagactttggacaaggtttatgaaggcgatgagacatatgca
tcgcttgatgaaccagctctgatcgagatggctggcaaccttcgcaacggtgtgccgttt
gcgacaccggtctttgatggagcgcacgaaccagacgttgtgacccagcttgaaaatgcg
ggtctaggacattccggtcaggtcactctttatgatggccggacaggagagactttcgac
cgtgatgtgacggttgggtacatctacatgctgaaactgcatcaccttgtcgatgacaag
attcatgcacgctcgatcggtccatacagtctcgtcacgcagcagccattgggtggtaag
gcccagttcggtggtcagcgcttcggtgagatggaggtgtgggcactggaagcttatggt
gccgcctacactttgcaggaaatgttgaccgtgaaatcggatgatgttgccggtcgtacc
aaggtctatgaagcaatcgttcgtggcgatgacacgttcgaagcgggtatcccggaaagc
ttcaatgttcttgtgaaagagatgcgttctctcggcctcaatgttgagctgatagatcgg
ccagcgagctaa
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