Rhodobiaceae bacterium SMS8: RHODOSMS8_02106
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Entry
RHODOSMS8_02106 CDS
T05596
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rbs
Rhodobiaceae bacterium SMS8
Pathway
rbs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RHODOSMS8_02106 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbs03019
]
RHODOSMS8_02106 (rhlE)
Enzymes [BR:
rbs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RHODOSMS8_02106 (rhlE)
Messenger RNA biogenesis [BR:
rbs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RHODOSMS8_02106 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
Flavi_DEAD
HEM4
Motif
Other DBs
NCBI-ProteinID:
AWZ01636
LinkDB
All DBs
Position
complement(2114000..2115304)
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AA seq
434 aa
AA seq
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MTDFKDLKLAEPLLRALGEEGYATPTPIQGKSIPALLEQRDLLGVAQTGTGKTASFALPL
LHRLSLSNRKAVSNKPQALILAPTRELATQISENLFAYGRHLHLRTAVVFGGTSIRAQIQ
AMARGVHILVATPGRFMDLMAQGHILLDNVEVFVLDEADRMLDMGFVRDVKKIAAALPRE
RQTVLFSATMPKVVQGLANGLLTDPVRVEVAPAATTAEKIAQKILFVPKEKKRELMCELL
KDEAIKRVLVFTRTKRGADRVAKFLQNSGVRADAIHGNKAQNARQRALAGFKSGRIRALV
ATDIAARGIDVDGVTHVINFELPDDPENYVHRIGRTARAGSSGIALSFCDLEERAVLRDI
EKTIRQTIPVMEDQPYHSPEIASATGTAKRKSQGQKRPQGQKKSPGQKKPQGQSKNGKRK
PASRRSRRPAAKAA
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgaccgattttaaagatctaaaactcgctgaaccattgctacgcgcgcttggtgaggaa
gggtatgcaacgccaactccgatacagggaaaatccattcctgcgctgcttgaacagcgt
gacctgttaggagttgcacaaactggaacgggaaaaacggcgtcctttgctctgcctctt
ctccatcgtttgtctctgtcaaacagaaaagctgtcagcaacaaaccccaggctcttatc
cttgcgccaacacgtgaacttgcaactcagatttcagaaaatctgtttgcctatggccgc
catctgcatcttcgtacagctgtggtatttggtgggacttcgatccgtgctcaaattcag
gccatggcgcgcggggtgcacattcttgtcgcgacacccggccgatttatggacctcatg
gctcaaggccatattctccttgataatgttgaagtgtttgttcttgatgaagcagatcgc
atgcttgatatgggatttgtgcgggatgtcaaaaaaattgccgctgcgctgccccgtgaa
cgccagacagttcttttctcagcgacaatgcccaaggtcgtgcaagggttggcgaacggt
ttgctaacagaccctgttcgcgttgaggtggctccagctgcgaccacggcagaaaaaatt
gcacaaaaaattctctttgttccaaaggaaaaaaagagggagttgatgtgtgagctgttg
aaggacgaggccatcaagcgggttttggtgtttacgcggaccaaacgcggtgcagaccgg
gtcgccaaatttcttcaaaatagtggtgtccgtgccgacgcgatccacggcaataaggcg
cagaacgctcggcaacgcgcattggctggttttaagtcaggacgcattcgggcattggtt
gccactgacattgcggcacgtggcattgatgttgatggggttactcacgttattaatttt
gagctgccagatgatcctgagaattatgtccacagaattggccggacagcgagggccgga
tcctccggtattgcactctcattctgtgatcttgaggagcgggcggtattgcgggatatc
gagaaaaccattcgtcaaacaataccggtgatggaagaccagccttaccattccccggag
atcgcgagcgctaccggcacagcgaagcgcaaatcacagggccaaaaaagacctcaagga
cagaaaaaatcaccgggtcagaaaaagccgcaaggtcagagcaagaatggaaagcgcaaa
cctgcatcgcggcgttcgcgtcgaccagctgcgaaggccgcataa
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