Rhodobiaceae bacterium SMS8: RHODOSMS8_02676
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Entry
RHODOSMS8_02676 CDS
T05596
Symbol
lysA
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
rbs
Rhodobiaceae bacterium SMS8
Pathway
rbs00300
Lysine biosynthesis
rbs00470
D-Amino acid metabolism
rbs01100
Metabolic pathways
rbs01110
Biosynthesis of secondary metabolites
rbs01120
Microbial metabolism in diverse environments
rbs01230
Biosynthesis of amino acids
Module
rbs_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
rbs00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
RHODOSMS8_02676 (lysA)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
RHODOSMS8_02676 (lysA)
Enzymes [BR:
rbs01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
RHODOSMS8_02676 (lysA)
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Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
AWZ02191
UniProt:
A0A2Z4UMQ1
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All DBs
Position
2694283..2695554
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AA seq
423 aa
AA seq
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MHHFHYQDGTLHAEDVSLKEIAAEVGTPFYCYSTATLERHYRVFAEAFEGTDTLVCYSVK
ANSNLAVIKTLGELGSGADIVSEGELRRALAADIPPQRIVFSGVGKQAQELAFALETGIH
QFNVESEPELELLSQIASSMGKEAAIALRVNPDVDAKTHEKITTGKAENKFGISWLQAPR
VYARAAELPGIKVAGVDVHIGSQLTDLAPFEEAFTRVASMVEELRAAGHDITRLDLGGGL
GIPYRGTNDVPPPPADYAAMVKRTVGHLGCQLMFEPGRMIAGNAGILVVNVIFEKHGEDR
SFLIIDGAMNDLIRPTLYDAYHDIQPVTETAPGEARLTYDIVGPICETGDFFAKGRALSA
QKPGDLLAVMSAGAYGAVQASTYNTRPLVPEVMVNGSQFTVIRPRPSYDAMLEQDRLPDW
LTN
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
ttgcaccactttcactatcaggacgggaccctccacgccgaggatgtatccctgaaggaa
attgccgccgaagtcggcacgcccttttactgctattcaacggccacgctcgaaagacac
tatcgtgtctttgcagaagcctttgagggcacggacacgcttgtctgctactccgttaaa
gcaaactcaaacctcgctgtgattaaaacacttggtgagctgggctcaggcgccgacatc
gtctcagaaggcgaactgcgacgcgctcttgccgctgacatcccgccacagcggatcgtc
ttctccggtgtaggcaaacaggcgcaggagctcgccttcgcgctcgaaaccggcatccat
cagttcaacgtggaatcagagcctgagctagaactcttgtctcagatcgcgagcagcatg
ggaaaagaggccgccattgcgctccgcgtaaatccagatgtggatgccaaaacccacgag
aaaatcacaaccggtaaagcggaaaacaagtttggtatttcctggcttcaggcgccacgc
gtctatgcccgcgctgcagaactgcccggcatcaaggtcgcaggcgtcgatgtacatatt
ggcagccagctgacagatcttgcgccgttcgaagaagcctttacccgtgtcgcttccatg
gtcgaagaactgcgtgccgccggccacgacatcacccggctggatctcggcggaggcctc
ggcattccctatcgcggcaccaatgatgtgcctccgccaccagccgactatgctgccatg
gtcaagcggacggtcgggcacctcggctgtcagctcatgtttgagccggggcgtatgatc
gcggggaacgcaggcatcctggtcgtgaatgtcatatttgagaaacatggggaagaccgg
tcgtttctcatcattgatggcgcgatgaacgacctcatccgcccaacactctatgacgcc
tatcacgacatccagccagtcaccgaaacggccccaggcgaagcgcggcttacctatgat
atcgtgggtccaatctgcgaaaccggggactttttcgccaaagggcgcgccttgagcgct
caaaagcctggtgacctgctggcagtcatgtcggcaggtgcctatggcgccgtgcaggct
tccacctacaatacgaggcctttggtgccagaagtgatggtgaatggatcacaattcacc
gtgatccggccgcgtccaagttatgacgcaatgctggaacaggatagactacctgactgg
ctcacaaactag
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