Rhodobiaceae bacterium SMS8: RHODOSMS8_03081
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Entry
RHODOSMS8_03081 CDS
T05596
Symbol
xthA
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
rbs
Rhodobiaceae bacterium SMS8
Pathway
rbs03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rbs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RHODOSMS8_03081 (xthA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rbs03400
]
RHODOSMS8_03081 (xthA)
Enzymes [BR:
rbs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
RHODOSMS8_03081 (xthA)
DNA repair and recombination proteins [BR:
rbs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
RHODOSMS8_03081 (xthA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-ProteinID:
AWZ02591
LinkDB
All DBs
Position
3099594..3100412
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AA seq
272 aa
AA seq
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MPKLKTLKVATWNINSVRLRIESVEKFLKEQKPDVLCLQEIKCHNDVFPEKAFKKAGYGH
IALNGQKAYHGVATVSRVPLTNIEAREFCNKGDARHVAATVPDAGDVRIHNFYVPAGGDE
PDVDKNEKFAHKLDFLNEMEAWYKNHKNKKTSKMVLVGDLNIAPFEHDVWSHKQLLKVVS
HTPIEVEHLERVQKSHSWIDVMREFVPHDEKLYSWWSYRAKDWKAANKGRRLDHIWVTPA
MEGAAKSMEVVTDARGWEKPSDHAPVIATFKV
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
gtgccaaaactaaaaacacttaaagtcgccacctggaacatcaactctgtgcgcctgcgc
attgagagtgtcgagaaattcctgaaggaacagaaacccgacgtgctctgcctgcaggag
atcaaatgccataacgatgtattcccagagaaggcctttaagaaggcaggctacggccac
atcgcccttaacggacaaaaggcctatcacggcgtcgcaaccgtgagccgtgtgccactt
accaatatcgaagcgcgcgaattctgcaacaaaggcgacgcgcgccacgttgcagcgacc
gtgccggacgccggcgatgtgcgcatccacaatttctatgtgcccgcaggcggcgatgag
ccggacgtggataagaatgaaaagtttgcccacaagctcgacttcctcaatgagatggaa
gcctggtacaaaaaccacaagaataagaagacatcgaaaatggtactcgtgggtgacctc
aacatcgcaccgttcgaacatgatgtctggtcccacaaacagcttctaaaagtcgtgagt
cacacgccgatcgaggtggaacatcttgagcgggtgcagaagtcccattcctggatcgac
gtcatgcgcgaatttgttccccatgatgagaaactctattcctggtggagctaccgcgcg
aaagactggaaggccgcgaacaaaggccgccgcttggatcatatctgggtgacaccggcc
atggagggcgccgccaaatcaatggaagtggtgacagatgcgcgcggttgggaaaaaccc
tctgaccatgccccggtcatcgccaccttcaaagtctga
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