KEGG   Rhodobiaceae bacterium SMS8: RHODOSMS8_03112
Entry
RHODOSMS8_03112   CDS       T05596                                 
Name
(GenBank) hypothetical protein
  KO
K03628  transcription termination factor Rho
Organism
rbs  Rhodobiaceae bacterium SMS8
Pathway
rbs03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rbs00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RHODOSMS8_03112
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rbs03021]
    RHODOSMS8_03112
   03019 Messenger RNA biogenesis [BR:rbs03019]
    RHODOSMS8_03112
Transcription machinery [BR:rbs03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     RHODOSMS8_03112
Messenger RNA biogenesis [BR:rbs03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     RHODOSMS8_03112
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 AAA_25 NACHT S1CSD-TOTE-2 AAA Spore_III_AA AAA_14
Other DBs
NCBI-ProteinID: AWZ02622
LinkDB
Position
complement(3130054..3131319)
AA seq 421 aa
MTQIKLQELKAKSPTELLVVAEELEVENASTLRTQELMFAILKQYAERETDIIGEGVVEV
LQDGFGFLRSPEANYLPGPDDIYVSPSQIRRFSLRTGDTVEGDIRSPKEGERYFALIKVN
SINFADPEEARHKVHFDNLTPLYPEEKLEMEIDDPTRKDTSGRVIDIVAPLGKGQRGLIV
APPRTGKTVLLQNIAHSISANHPEAYLIVLLIDERPEEVTDMKRSVKGEVVSSTFDEPAV
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIISTALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRVFPA
MDILKSGTRKEELLVDKVELQKMYVLRRILNPMGTTDAIEFLLDKLKQTKNNGEFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgacgcagatcaaactgcaagaactgaaagcaaagtcacccactgaactgttggttgtg
gccgaagagcttgaagtagaaaacgcgagcacgctccgcacccaggagctgatgtttgca
atcctgaagcaatatgctgaacgggaaacagatattatcggcgagggcgtcgtcgaggtg
ctgcaggacgggtttggtttcctgcggtcaccagaagccaactatctgccgggtcccgat
gacatttatgtttccccgtcgcagatccgccgtttctctcttcgcacaggggacacggta
gagggtgatattcgcagcccaaaagaaggtgagcggtattttgctcttatcaaggtcaat
tccatcaattttgctgatccggaagaagcccgccacaaagttcacttcgacaatctgacg
cctctctatccagaagaaaaactggaaatggaaattgatgacccaacccggaaagacacg
tccgggcgggtgatcgatattgtggcgcctttgggtaaggggcagcgcggtctcattgtg
gcgccgccgcggactggtaagacggtcctgctgcaaaacattgcgcattcgatttctgcc
aaccatcctgaagcctatctgatcgtacttctgatcgatgagcggccggaagaggtgacg
gatatgaagcgctcggtgaagggtgaggttgtctcctctacctttgatgagccagcggtg
cgtcacgtgcaggtcgccgaaatggtgatcgaaaaagcaaagcgtctggtggaacatgga
cgcgatgtggtgatcttgctcgattctattacccgtctcggtcgtgcctacaacaccgtg
gtgccaagctccggcaaggtgctaactggtggtgtggatgccaatgccctgcagcgtccc
aaacggttcttcggcgcggcgcggaacatcgaagaaggtggttcgctcacgattatctct
actgccctcatcgatacgggcagccggatggatgaagtgatctttgaagaatttaagggc
acgggtaactcagaaattgtacttgatcgcaaagtggctgataagcgcgtcttcccggcg
atggatattctgaaatccgggacccggaaggaagagctgcttgtcgacaaggtcgagctg
caaaaaatgtatgtgcttcgccgtattctcaacccaatgggaacaactgatgctatcgag
ttcctgcttgataagctcaagcagaccaaaaacaacggtgaattcttcgacagcatgaat
acttaa

DBGET integrated database retrieval system