Rhodobiaceae bacterium SMS8: RHODOSMS8_03216
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Entry
RHODOSMS8_03216 CDS
T05596
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
rbs
Rhodobiaceae bacterium SMS8
Brite
KEGG Orthology (KO) [BR:
rbs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rbs03016
]
RHODOSMS8_03216 (truB)
Enzymes [BR:
rbs01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
RHODOSMS8_03216 (truB)
Transfer RNA biogenesis [BR:
rbs03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
RHODOSMS8_03216 (truB)
Prokaryotic type
RHODOSMS8_03216 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
TruB_C
DKCLD
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
AWZ02726
UniProt:
A0A2Z4UP53
LinkDB
All DBs
Position
3238757..3239728
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AA seq
323 aa
AA seq
DB search
MGRRKKGDPVSGWVIVDKPVGPTSTQVVGAVRRAFNAQKAGHAGTLDPLAEGILPIALGE
ATKTIPFVVDSEKVYRFTVKWGAATTTDDAEGEIVQSSDERPARAAIEAALEGFLGEIEQ
VPPQFSAIKVDGERAYDIARDGERVELKSRPVTIYEAELLDVPDPDHAAFEITCSKGTYV
RSLARDLGEVLGCFGHVVALRRLSTGPFGEEASISLDKLKEFGNSAAARPTLWAHLHPLE
TALDDIPAVAVSDQDAARLKQGQAILLRGRDAPVLEGIALTVAGGTPVALAEYDRGELKP
VRVFNLTDQGLTRTPHAASGEGP
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgggccgccgcaaaaagggtgatccggtctccggctgggtgattgtcgataagcccgtg
ggcccgacatctacgcaagtagtgggcgcagtccgccgcgccttcaatgcgcaaaaagcc
ggtcatgcgggcacgcttgacccgctcgctgaaggtattttgccaattgccttgggcgag
gcgaccaaaaccattccctttgtggtggatagtgagaaggtctaccgctttaccgtgaaa
tggggggcggccacgaccaccgacgacgctgagggggagattgtccaatccagcgatgag
aggcctgccagagccgccatagaggctgctttagaagggtttctgggcgagattgaacaa
gtgccaccccaattctccgccatcaaggtagacggcgagcgggcgtacgacattgcccgt
gacggagagagggtggagttgaaatcacggcccgtgaccatctatgaagctgagctgctc
gatgtgcccgatcccgaccatgctgccttcgagattacctgctcaaagggcacctatgtc
cgctctctggcgcgtgatttaggcgaggttttgggctgttttgggcatgttgtggcctta
agacgcctctcaaccggaccttttggcgaagaggcgtcgatttcgctggataaactcaag
gagttcggcaatagtgccgccgctcgcccgaccttgtgggcccatcttcatccgcttgag
accgcgctggacgacatcccggcggtggccgtaagtgatcaagatgcagctcgattgaag
caaggacaggcgattttgttacgcggtcgtgatgcaccggtattggagggtattgccctc
accgttgcaggcggcacgccggttgccctggcagagtatgaccggggcgaattaaagccg
gtccgcgtttttaacctgaccgatcagggcctcactcggacgccgcatgcggcatccggc
gaagggccctga
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