Rhodobiaceae bacterium SMS8: RHODOSMS8_03284
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Entry
RHODOSMS8_03284 CDS
T05596
Symbol
alkA
Name
(GenBank) putative bifunctional transcriptional activator/DNA repair enzyme AlkA
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
rbs
Rhodobiaceae bacterium SMS8
Pathway
rbs03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rbs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RHODOSMS8_03284 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rbs03000
]
RHODOSMS8_03284 (alkA)
03400 DNA repair and recombination proteins [BR:
rbs03400
]
RHODOSMS8_03284 (alkA)
Enzymes [BR:
rbs01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
RHODOSMS8_03284 (alkA)
Transcription factors [BR:
rbs03000
]
Prokaryotic type
Helix-turn-helix
AraC family
RHODOSMS8_03284 (alkA)
DNA repair and recombination proteins [BR:
rbs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RHODOSMS8_03284 (alkA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
HTH_29
LysM
Motif
Other DBs
NCBI-ProteinID:
AWZ02794
UniProt:
A0A2Z4UNW5
LinkDB
All DBs
Position
complement(3306466..3307962)
Genome browser
AA seq
498 aa
AA seq
DB search
MDICSPTPFPTPDACYAAIQARDTRFDGRFFTGVTSTGIYCRPVCPARLPKRENCTFWPS
AAAAEQAGFRACLRCRPEAAPGTPAAQGSAATVSRALRLIGEGALDTGSVCQLADRLGLG
ERQVRRLFNMHLGANPEAVAATRRLLLANQLLRDTNLPVADIAFASGFSSLRRFNDAFAK
RYGEPPTAIRRAARKKGHGATNKDNALPFDLRLRLGFRPPFDWQMILDYFEIRAIPGVEA
IDGNRYRRTVRLNDAHAFIEAEPDKTRDILWVRVMSDRPFALADLVMRLRRLFDLDAQPQ
AIGAHFSDDPLIGPLVEQRPGLRIPGAFDGFELAIRAILGQQVSVKGATTIAGRLVETYG
DQVTPPGENWPSFLFPEPQTLVRDDLGKLGMPRTRGDTLSTIAKAVADGNVTLHPGVNIS
EMVAALTSLKGIGDWTASYVALRALGDPDAFPSGDLGLQKAAAPHSEKLSAKALSATAEN
WRPWRGYAALHLWSSLSS
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggatatttgctcaccaacgcccttcccgacacctgatgcctgctacgcggccattcag
gcacgcgacacccgctttgacgggcgcttttttaccggcgttacgtcaacggggatctat
tgccgcccagtctgcccagcccggcttcccaagcgggagaactgtacgttctggccgtct
gcggcggcggcggagcaggcaggctttcgcgcctgtcttagatgccgccccgaagcagcg
ccgggcacgcctgcagctcaggggtccgcggcaactgtgtcacgggcacttcgtctcatt
ggcgaaggcgcgctagatacagggagtgtctgccagcttgccgatcgtctgggtcttggt
gagcggcaagtgcgacgcctgttcaatatgcatttaggggccaatcctgaagcggtcgct
gcaacccgccgccttttgctcgccaatcaattgctgcgcgatacaaacctgcctgttgcc
gacatcgcctttgcgtctggcttttcaagcctcaggcgcttcaatgatgcgtttgccaaa
cgctatggcgaacccccaacagcgatccgacgggcggcgcgaaagaaaggccatggcgcc
accaataaggacaatgcgctgccgttcgatcttcggttacgccttgggtttcgaccgccc
ttcgattggcagatgatcttggactatttcgagattcgggccattcccggggtcgaggcg
attgacggcaatcggtaccgacggaccgttcggttgaacgacgcccatgcctttattgaa
gctgagccggacaagacccgtgacattctctgggtgcgggtgatgagtgaccggcctttc
gcacttgcagatcttgtcatgcgcctgcggcgcctgtttgatctagatgcacaaccacag
gctatcggcgcacatttttcagatgacccgcttattggtcccttggtcgagcagcggccc
ggtcttcgcattcctggtgcctttgatggtttcgaacttgcgatccgcgccattctcggc
cagcaggtttcggtcaaaggagccaccaccatcgcgggccgcctggtggagacctatgga
gatcaggtgacaccaccgggggaaaactggccgtcatttctgttcccagaacctcagacc
cttgtaagggacgatctagggaaactaggtatgccccgcacccgtggagatacattgtca
accattgccaaagcggttgcagacggcaacgtcacattgcatcccggcgtcaatatttct
gagatggttgctgcccttacgtcgctcaagggcatcggcgattggacggcctcctatgtt
gcgttgcgcgcgctaggcgatcctgatgctttcccgtctggtgatctggggcttcaaaaa
gccgccgcccctcattctgaaaaattgagcgcgaaagcgctctctgcaaccgcagaaaat
tggagaccctggcggggctatgccgctcttcacctctggtccagcctgtcctcgtag
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