Rickettsiales bacterium Ac37b: NOVO_02255
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Entry
NOVO_02255 CDS
T03234
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rbt
Rickettsiales bacterium Ac37b
Pathway
rbt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NOVO_02255 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbt03019
]
NOVO_02255 (rne)
03009 Ribosome biogenesis [BR:
rbt03009
]
NOVO_02255 (rne)
Enzymes [BR:
rbt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NOVO_02255 (rne)
Messenger RNA biogenesis [BR:
rbt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NOVO_02255 (rne)
Ribosome biogenesis [BR:
rbt03009
]
Prokaryotic type
rRNA processing factors
NOVO_02255 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
DNA_pol_P_Exo
Motif
Other DBs
NCBI-ProteinID:
AIL64846
UniProt:
A0A077FND6
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All DBs
Position
454363..456525
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AA seq
720 aa
AA seq
DB search
MQKKIFVDANNTNDIRVVVYENNLIQEYDDEAAIRKQIKGNIYLAKVTRVEPSLQAAFID
YGAEKHGFLPFAEIHPDYYQIPLADRQGTSEESSDTNDYEREDIRYQVRAITPPEYSNED
ENEELESTTDIVANDDNSSDKNIDTNFSDNNILQDEDFSQSEEIIDNKVSDSIEEELEES
RNNVRNTLYKQYKIQDVIKRNQVILVQVIKEERGNKGASFTSYISLAGRYCVLMPNAARQ
GGVSRKINNFEDRKRLKLIIDDLSIPDGSSVIIRTAGSNKTKIAIRRDYNYLVRLWNSIR
ETTLTATTPAFIHAEGDLIKRTIRDLYDDSISEILIHGEQVYKTAKDFMKIIIPSHTNKV
KQYKGKSPIFCRYNIEEQIASLYNPVVQLSSGGYLVINHTEALIAIDVNSGKSTSERNIE
ETAFKTNIEAAYEIARQLRLRDLSGLIVIDFIDMVELRNRRLVEKAFKESLQFDRARIQV
SMISSLGLLEMSRQRLKPSFMEINTTKCEACNGKGSVRTVNAQTEMILRTIENEVYKGSF
SDAINVYAHFDVISYILNHKRNDVLKIEKQYSLKIYFKVDIAILNTPDSFSIEKVDLSLS
RESTIPISIAPEYGNITDEENYQEEYMPTTPENMENHRTSSHEHYSNKKFKRGNFDNRKR
SRDLGKPPLNKKKISRSHSKFNHYDKRNEFSRNHTNKSSNVPEKSAGGLLKSLWNKITSS
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaagaaaatttttgttgatgcaaataatacaaatgatattagagttgttgtatac
gaaaacaacctaatacaagaatatgacgatgaagcagctattagaaagcaaattaaaggt
aatatctatttagcaaaagtaactagagtagaaccatctttacaagctgcatttatagat
tatggcgctgagaagcatggatttctaccgtttgcagaaattcatcctgattattaccaa
ataccactagctgatagacagggcacatctgaggaatcttctgatacaaatgactatgag
agagaagacattagatatcaagtcagagctattacccctcctgaatatagcaatgaggat
gaaaatgaggaactagaatctactacagacattgtagctaatgatgataattcttctgat
aagaatatagatactaatttttctgataataatattttacaagatgaagatttttctcaa
tcagaagaaattattgataataaagtcagtgacagtatcgaggaagaacttgaggaaagt
agaaataatgtacgtaacactttatataagcaatataaaatacaggacgtaataaaacgt
aatcaagttatcttagtacaagttattaaagaagaacgtggtaataagggagcatccttt
acaagttatatatctcttgctggaagatattgtgtattgatgcctaatgctgcaagacaa
ggaggcgtctcacgtaaaataaataattttgaagatagaaaaagactaaagctcattatt
gatgatctcagtatacctgatggttcaagtgtaataatacgcacagctggatcaaataaa
actaaaatagctataagacgtgactacaattatttagtaagactctggaatagcattcgt
gaaactactctgacagcaaccactcctgcatttattcatgcagaaggagatttaataaaa
cgtacaattcgtgatctttatgacgatagtattagcgaaatacttattcatggtgaacaa
gtgtataaaactgccaaagattttatgaaaatcattataccttctcataccaataaagtg
aaacaatataagggcaaatcacctattttttgtaggtataatatagaagagcaaatagct
tctctatataatcctgtagtacaattatcttctggaggttatcttgtgattaaccacact
gaagctttaatagctattgatgtcaattcaggaaaatcaacctcagaacgtaatatagaa
gaaacagcttttaaaactaatattgaagctgcctatgaaatagcaagacaactaagatta
agagatttatctggactcatcgtaattgattttattgatatggtagaattacgtaatcgc
agattagtagagaaagctttcaaagaaagtttacaatttgatagagcacggattcaagtg
agtatgattagtagtttaggcctacttgaaatgtctagacaaagattaaagcctagcttt
atggaaatcaatactacaaaatgtgaagcatgtaacggtaaaggcagtgtacgtactgtt
aacgctcaaactgaaatgattttacgtactatagaaaatgaagtatacaaaggtagtttt
tctgatgcaattaatgtatatgcccatttcgatgtaatatcttatatcttaaatcataaa
cgtaatgatgtattaaaaatagaaaaacaatattcattaaaaatttattttaaggttgat
attgctattttaaatacccctgatagcttttccatagaaaaggtagatctatctttgtct
agagaaagcacaataccaattagtatagctccagaatatggtaatattactgatgaagaa
aattatcaagaagaatatatgcctactaccccagaaaatatggaaaatcatcgtacttct
tctcatgaacactattctaacaaaaaatttaaacgtggtaattttgataatagaaaacgt
agtagagatttaggtaaacccccactaaacaaaaagaaaatttctagatctcattccaaa
tttaatcattatgataaaagaaatgaattttctagaaatcataccaataaatctagcaat
gttcccgaaaaatcagcaggtggtttattaaaaagtctatggaataaaataacctctagt
taa
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