Rugosibacter aromaticivorans: PG1C_05395
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Entry
PG1C_05395 CDS
T03689
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rbu
Rugosibacter aromaticivorans
Pathway
rbu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PG1C_05395 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rbu03021
]
PG1C_05395 (rho)
03019 Messenger RNA biogenesis [BR:
rbu03019
]
PG1C_05395 (rho)
Transcription machinery [BR:
rbu03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PG1C_05395 (rho)
Messenger RNA biogenesis [BR:
rbu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PG1C_05395 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
AAA_25
S1CSD-TOTE-2
Mor
AAA
ResIII
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AJP48044
UniProt:
A0A0C5J8S3
LinkDB
All DBs
Position
complement(1090332..1091591)
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AA seq
419 aa
AA seq
DB search
MHLSELKALHVSQLLEMADANHIENANRFRKQELIYALLKNQAGKSEAIFGDGVLEILPD
GFGFLRSPESSYLATPDDIYISPSQVRRFNLHSGDTIEGEIRTPKEGERYFALVKVDRVN
GESPEVGKHKILFENLTPLHPTEHMLLERDIRTEENITSRVIDMIAPIGKGQRGLLVASP
KSGKTVMMQHIARAITANHPDVTLIVLLIDERPEEVTEMTRTVKGEVIASTFDEPATRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVQPASGKVLTGGVDANALQKPKRF
FGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEIHLDRRMAEKRVYPAINV
NRSGTRREELLLKPDVLQKMWVLRKLLYNMDDMEAMEFLLDKVKATKNNGEFFDAMRRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgcacctatccgaactcaaagcccttcatgtcagccaactgcttgagatggctgacgcc
aaccacattgaaaatgccaatcggtttcgcaagcaggagctgatctacgccctgctaaaa
aatcaggccggtaaaagcgaagcaattttcggggatggcgtgttagaaattctgcccgat
gggtttggctttctacggtcgcctgaatcatcctaccttgctacaccagacgacatctat
attagtcccagtcaggttcgtcgcttcaatttgcattcgggtgacaccattgaaggtgag
attcgaactcccaaagaaggtgagcgctactttgccttggttaaggttgatcgcgttaat
ggcgagtcccccgaggtaggtaagcacaaaatcctgttcgagaacctgaccccgcttcac
cctacggaacacatgctcctcgagcgagatattcgtactgaagagaatattacgagtcgt
gtcattgacatgattgcacccatcggcaaaggtcagcgcggactgcttgtggccagtccg
aaaagcggtaaaacagtgatgatgcaacacattgctcgcgcgattaccgccaatcatcct
gacgtgactctcattgttctgctgatcgacgagcgtcccgaagaagtcaccgaaatgact
cgcaccgtcaaaggcgaggtgattgcctcaaccttcgatgagcctgccacaagacacgta
caagtcgccgaaatggtcatcgagaaagccaagcgactggttgagcacaagaaggacgtg
gtgatcctgctagactccatcacccgtctggcgcgcgcctacaataccgtacaacccgct
tcaggcaaggtgctcacaggtggcgtagatgctaatgccctgcaaaagcccaaacgtttt
tttggcgccgctcgcaatatcgaagaaggtggatcgcttaccattattgccaccgcgctg
atcgaaaccggctcgcgcatggatgatgtgatttacgaagaattcaagggtacgggcaat
atggaaattcaccttgatcgtcgtatggccgaaaaacgggtttatccagccatcaatgta
aatcgctctggcacccgccgcgaagaactgctcctgaagcctgacgtgctgcaaaaaatg
tgggttctgcgcaagcttctctacaacatggacgacatggaagcgatggagtttctcctt
gacaaggtcaaagccaccaaaaacaacggcgaatttttcgacgctatgcgcagaagctga
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