Rugosibacter aromaticivorans: PG1C_06055
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Entry
PG1C_06055 CDS
T03689
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rbu
Rugosibacter aromaticivorans
Pathway
rbu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PG1C_06055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbu03019
]
PG1C_06055
03400 DNA repair and recombination proteins [BR:
rbu03400
]
PG1C_06055
Enzymes [BR:
rbu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PG1C_06055
Messenger RNA biogenesis [BR:
rbu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PG1C_06055
DNA repair and recombination proteins [BR:
rbu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PG1C_06055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
HHH
ResIII
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AJP48141
UniProt:
A0A0C5JLA7
LinkDB
All DBs
Position
complement(1238038..1239924)
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AA seq
628 aa
AA seq
DB search
MSPALETLHRIFGYSSFRGPQAEIIDHLIAGGDALVLMPTGGGKSLCYQIPALLRTGTAV
VVSPLIALMQNQVDALLQAGVRAAYLNSSLDYTTASATEQRLLRGELDLIYVAPERLLTD
RFLSLLDHLDTQGQLALFAIDEAHCVSQWGHDFRPEYIQLSALHQRYPNIPRIALTATAD
ALTRQEIITRLGLDSARIFISSFDRPNIRYLVVERDNPRQQLLEFLANHQNEAGIVYCLS
RKKVDETAAWLGTQGFTALPYHAGLDAATRQKNQQQFLRDEPVVMVATIAFGMGIDKPDV
RFVAHLDLPKSLEAYYQETGRAGRDGEPAEAWMAYGLNDVVIHRQRIDESVAGEEQKRVE
RGKLDALLAWCETTDCRRVFLLNYFSEAAAPCNNCDTCLNPPEIWDGTEAARKALSAALR
TGQRFGAGHLIDVLRGKTTDKVQQFGHQELPTFGVGADLDDHGWRAVFRQLLATGLLHAD
AQAYGALQLTESARPLLRGECTLSLRRAAARTRKKFPQGRTALAQAIRQVRPSSTPAIHS
TSINATSSVHATHSPIIDALRAWRSERAREQGVPAYVILHDRTLHELAARRPHSTDELLD
IPGIGQAKADRYGEALLRVLIKNFSPAL
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgtcccccgcactcgaaacactgcaccgcatcttcggctattcctcatttcgtggcccg
caagctgaaattattgatcacctgattgcgggcggtgacgccctggttttgatgccaacg
ggcggcggaaaatcactgtgctatcaaatccccgcccttttgcgcacgggcacggcagtg
gtcgtctctccgctcatcgcactcatgcaaaaccaggtggatgccttattgcaagccggg
gtgcgagcggcttacctgaactcatcgctcgattacactactgccagcgccactgaacag
cggctgctgcgtggcgagctggatttgatctatgtcgccccggaacgcctgctcacggac
cgctttctttccctgcttgatcacctggatacgcagggacagctcgcgctgtttgccatt
gacgaagcgcattgcgtttcacaatgggggcatgatttccgtccggaatacatccagctc
tcggctctgcaccagcgttaccccaacattccgcgcattgcgctcaccgccacggctgac
gcgctcacgcgtcaggaaatcatcactcgcctgggactggatagcgcacgtattttcatt
tccagttttgatcggccaaacattcgctacctggtggtagaacgcgacaatccgcgccaa
caactcctggagtttctggctaaccatcaaaacgaagcaggcattgtgtattgcctgtcg
cgcaagaaagtcgatgaaaccgcggcctggctgggtactcaaggcttcaccgctttgcct
taccacgccgggttagatgcggcgacccgacaaaaaaatcaacaacagtttttacgcgat
gagcccgtcgtcatggtcgccaccattgcctttggcatgggcatcgacaagcccgatgtg
cgctttgtcgcgcatctcgacctgcccaaaagccttgaggcctactatcaggaaaccggc
cgcgccgggcgcgatggcgaacccgccgaagcctggatggcttatggcttaaacgacgtc
gtgattcatcgccagcgcattgatgaatccgtcgcaggcgaggaacaaaaacgcgttgaa
cgcggcaaactcgacgccctgttggcctggtgcgaaaccactgattgtcggcgcgtgttt
ttgctcaactacttcagcgaagcggcggcaccgtgcaataactgcgatacctgtctgaat
ccgccggaaatctgggacggcaccgaagcggcgcgcaaagccctatcggcagcattacgc
accggccagcgatttggcgcggggcatttaatcgatgtattgcgtggcaaaaccacagac
aaggttcaacaattcggacatcaagagctacccactttcggcgtgggtgctgatctggac
gatcatggctggcgtgcggtatttcgccagctacttgccacgggtctactgcacgctgac
gctcaggcctatggcgcattacaactcaccgaatccgcccgccccttgctgcgcggcgaa
tgcacactatcgctgcgccgggcagcagcgcgcacacgcaaaaagttcccgcagggacgc
acagcgctggcgcaggcgatacggcaagtgcgcccatcatcgacgcctgccattcactcg
acatcgatcaatgcgaccagttcagtccatgcaacccattcgccgatcatcgatgccttg
cgcgcctggcgctcagagcgtgcgcgcgaacaaggcgtgccggcctatgtgattttgcat
gatcgcaccctgcacgaactcgccgcgcgacgtccgcactcgactgatgagctgcttgat
atacctggtattggccaggccaaggccgaccgctatggagaagccctgctcagggtattg
ataaagaatttttcccccgcgctgtaa
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