Rugosibacter aromaticivorans: PG1C_11470
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Entry
PG1C_11470 CDS
T03689
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rbu
Rugosibacter aromaticivorans
Pathway
rbu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PG1C_11470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbu03019
]
PG1C_11470
03016 Transfer RNA biogenesis [BR:
rbu03016
]
PG1C_11470
Enzymes [BR:
rbu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PG1C_11470
Messenger RNA biogenesis [BR:
rbu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PG1C_11470
Transfer RNA biogenesis [BR:
rbu03016
]
Prokaryotic type
tRNA degradation factors
PG1C_11470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
AJP49626
UniProt:
A0A0C5JQZ4
LinkDB
All DBs
Position
complement(2345508..2347628)
Genome browser
AA seq
706 aa
AA seq
DB search
MLSPVKKSFVYGDHTVTLETGEIARQAGGAVMVTMADTVVLVTVVGARSAKPGQDFFPLT
VDYQEKFYAAGRIPGGFFKREGRPSEKETLTCRLIDRPLRPLFPEGFYNEVQIVCTVMSC
NPEIDPDIPALLGASAALAISGIPFSGPIGAARVGYINGNYVLCPTKTQLLESTQLDLVV
AGTQAAVLMVESEAKQLSEEIMLGAVVFGHEQMQVAINAINEMVEQAGKPEWDWQPAPRN
EPLIARVAELAENELREAYRITSKQARAEKTREIIKKTVAALTEGVDNPPELNAVNNCLF
DLEAKIVRNKILSGEPRIDGRDTRTVRPIAIRNGVLPRTHGSALFTRGETQAMVVATLGT
GRDEQIIDALQGEYRDRFMLHYNMPPYATGETGRVGTPKRREIGHGRLAKRALVAVLPSA
EEFGYSMRVVSEITESNGSSSMASVCGGSLALMDAGVPLKAHVAGIAMGLIKEGNRFAVL
TDILGDEDHLGDMDFKVAGTEAGITALQMDIKIQGITKEIMQVALAQAKEARLHILELMK
NSMSGHREEVSSFAPRMIHMKINPEKIRDVIGKGGAVIRGLTEETGCVIDIEDDGSITIS
SVNADAAQIARKRIEDITAEVEVGRVYEGTVLRLLDFGAIVSLLPGKDGLLHISQIANER
VNAVADYLKEGQVVKVKVVETDDKGRVRLSMKAVDAEPAAAPEVAE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
gtgttaagtccagtcaaaaagagttttgtttacggtgaccatacggtcacgctagaaacg
ggcgagattgctcgccaagcagggggggctgtcatggtcaccatggcagacacggttgta
ttggtaaccgtcgttggcgcacgttcagccaagccaggtcaagactttttcccgctgacg
gtggattatcaggaaaaattctatgctgctggccgcatccctgggggctttttcaagcgt
gaagggcgcccgtcagagaaggaaactttaacctgccggttaatcgatcgcccgcttcgt
cctttattccctgaaggcttttacaacgaagtgcagatcgtttgcaccgtgatgtcatgt
aatccggaaatcgatccggatatccctgcgttactgggtgcttctgctgcattagccata
tccggtattccatttagtggcccgattggtgccgcacgcgtgggttatatcaatggcaac
tatgttttgtgcccaaccaagactcagttgcttgaaagcacgcagcttgacctcgtggtt
gctggaacacaagctgctgtcttgatggtggagtctgaagccaagcagctgtcagaagaa
atcatgttgggtgctgttgtatttggccacgaacaaatgcaagtggcaatcaatgccatt
aatgagatggttgagcaagcgggcaagcccgagtgggattggcaaccagcccctcgtaac
gagccactcattgcccgtgtggccgagttggcagaaaacgaattacgcgaggcgtatcgg
attaccagcaagcaagcgcgcgccgaaaaaacccgtgagatcatcaagaagacagttgcc
gcattaactgagggtgtcgacaatcctcctgaactcaatgcagtgaacaattgcttgttt
gatctggaagctaaaattgttcgcaacaagatactcagtggcgagccacgcattgatggg
cgagatacacgcactgtgcgccctattgccattcgtaacggtgtattaccgcgcacgcat
ggctctgccttatttacgcggggggaaactcaggccatggtcgttgcaaccctgggaacc
ggtcgtgatgaacaaataatcgatgcgttgcaaggcgagtatcgtgaccgcttcatgctt
cactacaacatgcccccctatgcaaccggcgaaacaggacgggtgggtacgccaaaacgc
cgtgaaataggtcatggccgcttagccaagcgtgcactggttgcagttttaccttcggca
gaagagtttggttactcaatgcgggtcgtatcggaaattaccgagtctaatggctcctcg
tccatggcttctgtttgcggtgggtcgcttgcgctgatggatgccggtgtgccgctcaag
gcacatgtggccggtattgcgatgggcctgatcaaagaaggtaaccgttttgccgtactg
acagacatcctgggcgatgaagatcatctcggcgatatggatttcaaggttgcaggtact
gaagcgggcatcactgccctgcagatggatatcaagattcaaggcatcaccaaagaaatt
atgcaagttgctctggcgcaagccaaagaggcacgtttgcatattcttgagttgatgaaa
aattcaatgtctggtcatcgcgaagaagtatccagctttgcgccacgcatgatccacatg
aagatcaatcctgaaaaaattcgtgatgtgattggtaaaggcggcgcggtgattcgtggt
ttgaccgaggaaacaggttgcgtcattgatatcgaagatgatggttcgatcaccatttct
tcagtcaatgccgatgctgctcaaattgcaaggaagcgaattgaagacattactgccgaa
gttgaagtcggtcgggtttacgaaggcactgtactacgcctgcttgatttcggtgcaatc
gtcagcctcttgccgggcaaagatggcctgctgcatatttcccagatcgcgaatgagcgg
gtcaatgcggttgctgattacctcaaagaaggccaggttgttaaagtgaaggtcgttgaa
acagatgataaaggccgcgtgcgtttatctatgaaggccgtggatgcggaaccagctgct
gcgcctgaggttgctgaataa
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