Rugosibacter aromaticivorans: PG1C_12370
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Entry
PG1C_12370 CDS
T03689
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rbu
Rugosibacter aromaticivorans
Pathway
rbu03030
DNA replication
rbu03430
Mismatch repair
rbu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rbu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PG1C_12370 (dnaE)
03430 Mismatch repair
PG1C_12370 (dnaE)
03440 Homologous recombination
PG1C_12370 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rbu03032
]
PG1C_12370 (dnaE)
03400 DNA repair and recombination proteins [BR:
rbu03400
]
PG1C_12370 (dnaE)
Enzymes [BR:
rbu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PG1C_12370 (dnaE)
DNA replication proteins [BR:
rbu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PG1C_12370 (dnaE)
DNA repair and recombination proteins [BR:
rbu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PG1C_12370 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AJP49003
UniProt:
A0A0C5JB20
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All DBs
Position
2540854..2544330
Genome browser
AA seq
1158 aa
AA seq
DB search
MSASPPPQFIHLRLHSEYSISDGITRLDEVIARAVADQQPALALTDLANLFGMVKFYSAA
RSQGIKPIIGCDVWIDDETALALEARSTPARLLLLVKNPAGYLRLCELLSTAYLAPRRHG
RAEISLTQISQGDNSGLIALSGGLSGDIGQWLAAGKIAQAETRARLWDGLFPGAYYIEVQ
RPSGRAANNNSASAESRLVDASADLAARLDLPLVATHPVQFLDQDDYKAHEARVCIAEGY
VLGDTRRPKNYSPEHYFKTQAEMVELFADLPEALENAVHIAQRCNLTLELGKSRLPDFPT
PHGEPLEDFLASESHAGLAHRLERLYPDAAERERQRPIYSERLDFEIKTIIQMGFPGYFL
IVADFINWAKKNGVPVGPGRGSGAGSLVAYSLGITDLDPLRYELLFERFLNPERVSMPDF
DIDFCQEGRDRVIDYVKKKYGAHAVSQIATFGTLAAKAVIRDVGRVLDLGFNFVDQFAKL
IPNELGITLKDALDKEPLIRQRIESEEEIAELWSLAIKLEGLTRNVGMHAGGVLIAPGKL
TDFCPLYAAAGTDSVISQFDKDDVEKAGLVKFDFLGLRTLTILDEAVRLVQEVEGVSIDL
DTLPLDDRETYDAVFKSANTTSVFQFESSGMKETLIQAKPDRLEDLIALNALYRPGPMDF
IPNFVARKHGRERVVYPHPSLERVLSTTYGIMVYQEQVMQTAQVVAGYSLGGADLLRRAM
GKKKKEEMDQQRAVFVEGAGKNNIGEAQANEIFDVMEKFAGYGFNKSHAAAYSLVAYQTG
WLKCHHPAAFAAATLSSEMANTDKIQFFFKDAIDNGLTFLPPDINASGVRFRPVDSKTIR
YGLGALKGTGEAALTVILKARTTDGPFTDLFDFCRRLDKRVVNRRVIESLIRAGAFDSVD
NHRAKLLASVSIALDAAEQAERNALQSGLFDTPETSNTQATAHYITTARWTEREQLLHEK
AALGFFLSGHPYHAYAAELSAFVKRRLGQVEPQRDPVLLAGIVIASRTQMTRRGKMAIVT
LDDGSSQIEVTVFNELWETERGKIKEDELLLVEGKVQKDDYSGGLRVTVEKLFTLSEARG
RFARSLQLTMNGGSDAKRLHALLAPFRPGPCPIRLRYTNSEASAELPMPDAWRVQLDDTL
LAGLTEWLTPENVKVVYV
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcctccccccccccgcaatttatccaccttcgcctgcacagcgaatactcaatc
agtgacggtataacgcgtcttgatgaagtcatcgcgcgagcagtggcagatcagcaaccc
gcgttagcgctaacagatttggccaacctgttcggtatggtcaagttttactcagcagcg
cgcagccaggggattaaacccattatcggctgcgatgtctggattgatgatgaaaccgca
ctcgctcttgaagcccgcagcactcctgcgcggctgttgctgctggtgaaaaatccggca
ggctatttacgactgtgcgaactactatccacggcctatcttgcgccgcgccgtcatggc
cgcgccgagatttcactcacacaaataagccagggcgataacagtggcctgattgcattg
tctggcgggctatcgggagacattggccaatggcttgccgcaggcaaaatcgcccaagca
gaaacccgtgcgcgcctatgggatggacttttccccggggcttactacatcgaggtgcaa
cgccccagcggccgcgctgccaacaacaatagcgcctcggcggaaagcaggctggtcgat
gccagtgcggaccttgccgcacgccttgacttgcctttggtcgccacccatccggtgcag
tttctcgaccaggatgactataaagcgcacgaagcccgcgtgtgcattgctgaaggctat
gtgctgggcgacacgcgccgtccaaaaaattacagcccggaacactatttcaaaacccag
gccgagatggtcgagttgttcgccgacttacccgaagcactggaaaatgcagtgcacatc
gcacaacgctgcaatctgacactggaactcggcaaaagccgcttgccggatttccccacg
cctcatggtgagccactggaagattttctcgcgagcgaatcacacgcgggcctggcgcat
cggctggagcgactctaccccgatgccgccgaacgcgaacgacagcggcccatttacagc
gaacggcttgattttgaaatcaagacgattatccagatgggctttcccggctacttcttg
atcgttgctgacttcatcaactgggctaaaaaaaatggcgtgccggtcggcccgggccgt
ggttcgggcgcaggctcgctcgtcgcctacagcctcggtattacggatcttgacccactg
cgctatgaactgctgttcgaacgcttcctgaaccctgagcgcgtctcgatgcctgacttt
gacatcgacttctgccaggaaggccgcgaccgggtcatcgattacgtcaagaaaaaatac
ggcgcgcacgcggtatcgcaaattgccactttcggcaccctcgcagcaaaagccgtgatt
cgtgacgtcggccgtgtgcttgatctgggctttaatttcgttgaccaatttgccaagctc
atcccgaatgagctgggcatcactctcaaagacgcactggataaagagcccttgattcgc
cagcgcatcgagtccgaagaagaaattgccgagctgtggtcgctcgccatcaagctcgaa
ggcctcacgcgcaacgtcggcatgcatgccggtggcgtattgatcgcccccggcaagctc
accgacttttgcccgctgtatgccgctgccggcacggattccgtgatttcgcaatttgat
aaggacgatgttgaaaaagccgggttggttaaattcgactttctgggtttgcgcacgctc
accatcctcgatgaagccgtgcgcctggtgcaggaagtcgaaggcgtatccattgatctg
gatacgctgccactggatgatcgcgaaacctacgacgcggttttcaaaagcgcgaacacc
acctcggtatttcaatttgaatccagcgggatgaaagaaacattgatccaggcaaagcct
gatcggctggaggatttgattgcgctcaatgccctgtaccgaccggggccgatggatttc
attcccaattttgttgcccgcaagcatggccgcgagcgcgtggtttatccgcacccgagc
ctggagcgtgtgttgtctactacctacggcatcatggtgtatcaagagcaagtgatgcag
acagcgcaggtcgtggcgggctacagcctcggtggtgcggacctcttgcgccgcgcgatg
gggaaaaagaaaaaagaggaaatggatcagcagcgcgccgtctttgtcgagggtgctggc
aaaaataatatcggcgaagcccaggccaacgaaattttcgatgtgatggaaaagttcgct
ggctatggcttcaacaaatcccacgccgccgcttattcgctggtggcttatcaaaccggc
tggctcaagtgtcatcatccggccgcatttgctgcggccactttgtcgtcagaaatggcc
aacaccgacaagatccagttctttttcaaagacgcaatcgacaatggtctgacctttttg
ccaccggatatcaacgccagcggcgtgcgctttcgccccgttgacagcaaaaccatccgt
tatggcctgggcgcactcaaaggcacgggcgaagccgcgctcacggtgattttgaaagcc
cgcaccaccgatggccccttcaccgatttgtttgatttttgccgacggctcgataaacgc
gtggtcaaccgccgcgtgattgaatcgctcatccgtgcgggggcttttgacagcgtcgac
aaccaccgcgccaagctactggcctcagtaagcattgcgctggacgccgccgaacaagcc
gagcgcaacgccctgcaaagtggtttgtttgacaccccagagaccagcaacacgcaagcc
accgcacattacatcaccaccgcgcgctggactgaacgcgagcaactgttgcacgaaaaa
gccgcgctggggtttttcctctctggccatccgtaccatgcctatgccgccgaattgtct
gcttttgtgaaacgccgcctcgggcaagtcgaaccgcagcgcgacccggtgttgctcgcc
ggcatcgtcatcgcaagtcgcacccagatgacgcgccgcggcaaaatggccatcgtcacc
ttggatgatggcagttcgcaaatcgaagtcaccgtatttaacgaactgtgggaaacagaa
cgcggcaagatcaaggaagatgaactgctgctggtagaaggcaaagtgcaaaaagacgat
tacagcggcggcctgcgcgtcactgttgaaaagctcttcacgctgagtgaggcacgcggc
cgctttgcccgcagcctgcagctcaccatgaatggcggctcggacgccaaacgcttacac
gcattgctcgccccttttcgcccggggccttgcccgatacgcttacgctataccaacagc
gaagccagcgctgaactccccatgcccgacgcctggcgtgtacagcttgacgacacgcta
ctcgccgggctcactgaatggctgacacctgaaaacgtcaaagtggtttacgtttaa
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