Rugosibacter aromaticivorans: PG1C_12935
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Entry
PG1C_12935 CDS
T03689
Name
(GenBank) DEAD/DEAH box helicase
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
rbu
Rugosibacter aromaticivorans
Brite
KEGG Orthology (KO) [BR:
rbu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rbu03009
]
PG1C_12935
Enzymes [BR:
rbu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PG1C_12935
Ribosome biogenesis [BR:
rbu03009
]
Prokaryotic type
rRNA helicases
PG1C_12935
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GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AJP49671
UniProt:
A0A0C5JR27
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All DBs
Position
2649461..2650825
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AA seq
454 aa
AA seq
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MPLSPAMLVNLQQLGYAQMTPIQAASLPLSLAGHDLIAQAKTGSGKTAAFGLPLLTKLNP
RNFAVQALVLCPTRELADQVTQEIRRLARGENNIKVLTLCGGNTLRPQISSLEHGAHVVV
GTPGRIMDHLQRGSMDLTMLNTLVLDEADRMLDMGFFDDIAFVAKACPKERQTLLFSATY
PESIAGLSRQFLRQPQQVTLTEQHEASKIRQRFYEVENEDKFAAVALLLNHYRPVSTLAF
CNTREQCRALLQVLRDEGFVALALHGELEQRERDQVLVQFANRSCSVLVATDVAARGLDI
AQLEAVINVDVTPDPEVHIHRIGRTGRVDQAGWAFSLVSGNQMGRVAEIEKMQGVEFEWH
TLSELHPASGAAKTPLLPPMVTLLILGGRKEKIRPGDILGALTGEAGFSKEQIGKINITE
TSAYVAVERGIAREAHRKLSTGSIKGKRVKVHLL
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
ctgccgctttctcctgccatgctggtgaatctgcaacagctaggctacgcacagatgaca
ccgattcaggcggccagcctgccgctctcactcgccgggcatgacctcattgcgcaggca
aaaaccggcagtggcaagacggcggcttttggtttgcctttgctcaccaaactcaacccg
cgcaactttgccgtgcaggctttggtgctttgccccacacgcgaattggccgatcaggtc
acgcaagaaattcgccgtttggcgcgtggtgaaaacaacatcaaggtgctcaccctgtgc
ggtggcaacaccctacggccacaaatatccagcctggaacatggtgcacacgtcgtcgtg
ggcacaccgggtcgcatcatggatcacttgcaacgtggcagtatggatctaacaatgctc
aacacgctggtgctggatgaagcggatcgcatgctggatatgggattctttgacgatatc
gccttcgtcgccaaagcctgccccaaagagaggcagaccttgttattctccgccacttat
cctgaaagcattgccgggttgagccgacaatttttgcgccagccgcaacaggtcacgctc
accgaacagcacgaagccagcaaaattcgccagcgtttttatgaagtggaaaacgaagac
aaattcgccgccgtcgcgttgttgctcaaccactatcgcccggtgagcacattggcattt
tgcaacacgcgcgagcaatgccgtgcgttgttgcaagtgctgcgcgacgaaggcttcgtt
gcactcgccttgcatggcgagctggagcaacgcgaacgcgatcaagtgctggtgcaattt
gccaaccgcagctgctcggttttggtggccaccgatgtcgccgcacgcgggctggatatc
gcacaactggaagccgtgatcaatgtggatgtcacgccggaccctgaagtgcatatccat
cgcattggccgcaccggtcgtgtcgaccaggccggatgggcgttcagcctggtgagcggc
aaccagatggggcgtgtggccgagattgagaaaatgcaaggcgttgaattcgaatggcac
acgttgagcgaattgcatcctgcatccggcgcggcaaaaacacctctgctgccgcctatg
gtcaccttgctgatcctcggcggccgcaaagaaaaaatccgcccgggtgacatactcggc
gcgctaacgggtgaagccggattcagcaaagagcaaattggcaaaatcaatatcacggaa
acctctgcctatgtcgccgttgagcgcggcattgcgcgcgaggcacaccgcaagctgtca
actggctcaatcaagggcaagcgagtgaaagtgcatttgctgtag
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