Rugosibacter aromaticivorans: PG1C_13325
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Entry
PG1C_13325 CDS
T03689
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rbu
Rugosibacter aromaticivorans
Pathway
rbu02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rbu00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PG1C_13325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rbu03021
]
PG1C_13325
Transcription machinery [BR:
rbu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PG1C_13325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SPO22
GTP_EFTU
Motif
Other DBs
NCBI-ProteinID:
AJP49686
UniProt:
A0A0C5JR40
LinkDB
All DBs
Position
complement(2735417..2737333)
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AA seq
638 aa
AA seq
DB search
MAVEVVAKGRGRKSKEKLIIAPQAAPLDMDAKRSRLKTLIALGKERGYLTYAEINDHLPD
ELVDAEQIESIIATFADMSIQVFDEAPAVEDMLLNQTTPAPVDAEEVEEQAEQALSTVDS
EFGRTTDPVRMYMREMGSVGLLTRESEIEIAKRIEDGLKHMVMAISACPTTIAAMLDMAA
RVARDEMRIDELIDGLIDPNASDEELEAAAAEEEIEEDFADGDDGSAQVSASLLKLKQDA
LERFSLIHALYGKLQQTLSKKGSEDKSYLRVKKQIADELLNIRFTAKTIERLCGSVRSIV
DAVRSHERKILHFCVDKSHMPRQHFIKAFPGNEVNMDWVKKEIQSGKPYAALLMRNAPNV
LDEQHKLIDLQNSTGIPLKELKDINKQMSTGEAKARRAKREMTEANLRLVISIAKKYTNR
GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMI
ETINKMNRISRQILQETGQEPLPAVLAEKMEMPEDKIRKILKISKEPISMETPIGDDDDS
HLGDFIEDQATLLPNEAALFSSLRDVTKEILDSLTPREAKVLRMRFGIEMNTDHTLEEVG
KQFDVTRERIRQIEAKALRKLRHPTRSEKLRSFLDSET
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
gtggcggtcgaagtggttgccaaaggccgtggccgcaagagcaaagagaaattgatcatc
gcgcctcaagccgctccccttgatatggatgccaagcgcagccgcctcaaaaccctgatt
gccttgggcaaagaacgtggctatctgacgtatgccgaaattaacgatcatctgcctgac
gagcttgtcgatgcagagcagatcgaatcgattattgccacctttgcggatatgtcgata
caagtgtttgatgaagcgcctgctgtcgaagacatgctgctgaaccaaaccacgccagca
cctgttgatgccgaagaagttgaagagcaagccgagcaagcgttatcgacggttgattcc
gaatttggccgcacgacggatccagtgcgtatgtatatgcgcgaaatgggctcggttggg
ctgttgacgcgcgagagcgaaattgaaatcgccaagcgcattgaggatggcttaaagcac
atggtgatggctatttctgcctgccccaccaccattgccgccatgctcgatatggccgct
cgcgtcgcgcgcgatgagatgcgcatcgatgaactcattgatggtctgattgatccgaac
gcctctgacgaagagctggaagccgccgccgcagaagaagaaattgaagaagattttgcc
gatggggatgacggtagtgcgcaagtttctgcctcattactgaagctcaagcaggacgca
ttagaacgcttctcgctcatccatgcgctctacggtaaattgcagcagaccttatccaag
aaaggttctgaggataaaagttatctgcgcgtcaaaaagcagattgcagatgagctcctg
aatatccgcttcactgccaaaacaattgaacggctgtgcgggtcggtgcgcagcattgtt
gatgccgtgcgtagccacgaacggaaaatcctgcatttttgtgtagataaatcgcatatg
ccacgacagcatttcattaaggcattccccggcaatgaggtcaacatggattgggtcaaa
aaagagatccagtcaggtaagccctatgctgccctattgatgcgcaatgcccctaatgtc
ttggacgagcagcacaagttgatcgacctgcaaaacagtacagggatcccgctcaaagaa
ctcaaagacatcaacaaacagatgtccactggtgaagccaaggcccgccgtgccaagcgc
gaaatgaccgaagccaacctgcggctggtgatctcgattgccaaaaaatacaccaaccgt
ggcttgcagttccttgacctgattcaagaaggcaacatcggtctgatgaaggccgtggat
aaattcgaatatcgccgtgggtacaagttttcgacttatgccacctggtggattcggcaa
gccattacccgctcgatcgccgatcaggcgcgcactatccgcatcccggtgcatatgatc
gagaccatcaacaagatgaatcgcatcagccgtcagatattgcaggagacaggtcaagag
ccgctacccgccgtactggcagaaaaaatggaaatgcccgaggataaaattcgcaagatt
ctgaaaatttccaaagagcccatttccatggaaacgccgattggcgatgatgacgattcg
cacctgggcgactttatcgaagaccaggccacgctgctgcctaacgaagccgcgctgttt
tcaagcctgcgtgatgtcacgaaggaaattctcgacagtctcaccccgcgcgaagctaaa
gtgttgcgcatgcggttcggtatcgaaatgaacactgaccacacgctggaagaagtcggc
aagcagttcgatgtgacccgcgagcgtatccgccagattgaagccaaagccctgcgcaaa
ctgcgccatccgacccgttcggaaaaactgcgcagcttcctcgattcggagacctga
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