Rhizobium brockwellii: RLCC275e_00260
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Entry
RLCC275e_00260 CDS
T09359
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
rbw
Rhizobium brockwellii
Pathway
rbw02020
Two-component system
rbw02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rbw00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
RLCC275e_00260 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RLCC275e_00260 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rbw03021
]
RLCC275e_00260 (rpoN)
Transcription machinery [BR:
rbw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RLCC275e_00260 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
QJX03478
LinkDB
All DBs
Position
48384..49943
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AA seq
519 aa
AA seq
DB search
MALSANLFLRQTQSLVMTPQLMQSIQLLQMTHFELNQFIALEVEKNPLLEFPSNDGEAGG
ERGEAEDGEYAHQPEDAGSDDGYDNRTEALSSDWYDNGGSASTSRLNDELDANYTNVFPD
DGAPQRLDAPELVSQWKSMPGSGEGADYDLDDFVAGQVSLRDHLAQQIPFVLPDMADRLI
AQNFVDQLDDCGYLQADIVEAGERLGTSLAQAERVLATLQSLDPPGVFARSPAECLAIQL
RQKDRYDPAMQAMVENLELLASRDFATLKRLCGVDEEDLLDMLGEIRQLNPKPGSGFGAG
VSEAIMPDVVVRASSDGGWRVELNPDALPRVLVNQSYFSRVTKNGEDHAFLSDCLQTANW
LTRSLDQRAKTIMKVASEIVRQQDAFLLHGVDYLRPLNLKTVAEAIKMHESTVSRVTSNK
YMLTPRGLFELKYFFTVSISAVAGGDSHSAEAVRHKIRALILQESPEAVLSDDDIVDMLK
KGGVDLARRTVAKYREAMNIASSVQRRREKRALAKVAGF
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggcactgtccgccaatcttttcctgcgccagactcagtctttggtgatgacgccgcaa
ctgatgcaatccatccagttgctgcagatgacgcatttcgaactcaaccagttcatcgcc
ctggaagtggagaagaacccgctgctcgaatttccgtcgaatgacggcgaggcgggtggc
gaacgcggcgaagccgaagatggagagtatgctcatcagccggaggacgccggttctgac
gacggctacgacaaccgcaccgaggcgctctccagcgactggtatgacaatggcggcagc
gccagcaccagccggctgaacgacgaactcgacgccaattacaccaatgtctttcccgat
gacggtgccccgcagcgcctcgatgcgccggagctcgtcagccagtggaaatcgatgccg
ggcagcggcgagggcgccgactacgatcttgacgatttcgtcgccggccaggtgtcgctg
cgcgatcatctcgcccagcagatccccttcgtcctgcctgacatggccgaccggctgatc
gcgcagaatttcgtcgaccagctcgacgactgcggttatctgcaggccgatatcgtcgag
gcgggcgagaggttgggcacgagcctcgcacaggccgagcgcgtgctcgccaccctccag
agcctcgatccgccgggtgttttcgcccgcagccctgccgaatgcctggcgatccagctc
aggcagaaggaccgatacgacccggccatgcaggctatggtcgaaaacctcgaactcctg
gcgagccgcgatttcgccacgctgaagcggctttgcggcgtcgacgaggaagatcttctc
gacatgctcggcgagatccgccagctcaatccgaagcccggcagcggtttcggggcgggc
gtttccgaagcgatcatgcccgatgtggtcgtcagagcctcctcggatggcggctggcgg
gtcgaactcaatccggatgcgctgccgcgcgtgctggtcaaccagtcttatttttcccgg
gtgacaaagaacggcgaggatcatgccttcctctccgattgcctgcagaccgccaactgg
ctgacgcgcagcctcgatcagcgggctaaaaccatcatgaaggtggcaagcgaaatcgtc
cgccagcaggacgccttcctgctgcacggcgtcgactatctgcgcccgctgaacctgaag
acggtcgccgaagcgatcaagatgcatgaatccaccgtcagccgcgtcacgtcgaacaaa
tatatgctgacgccgcgcggtctcttcgaactcaaatatttcttcaccgtctcgatcagc
gccgtcgcaggcggcgacagccattcggccgaagccgtgcgtcacaagatccgcgcgctg
atcctgcaggagagcccggaggcggtgctttccgatgacgatatcgtcgacatgctgaaa
aagggcggcgtcgatctcgcccgccgcacggttgcgaaataccgggaggcgatgaacatt
gcctcttcggtgcagcgccgccgcgagaagcgggcgctcgccaaggtcgccggtttctga
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