Rhizobium brockwellii: RLCC275e_06940
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Entry
RLCC275e_06940 CDS
T09359
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rbw
Rhizobium brockwellii
Pathway
rbw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RLCC275e_06940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbw03019
]
RLCC275e_06940
Messenger RNA biogenesis [BR:
rbw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RLCC275e_06940
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
RMMBL
Lactamase_B
Lactamase_B_3
Anti-Pycsar_Apyc1
Regulator_TrmB
Motif
Other DBs
NCBI-ProteinID:
QJX04698
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Position
1360931..1362601
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AA seq
556 aa
AA seq
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MAKQDELVFLPLGGVGEIGMNLALYGYGPPEHRQWIMVDCGVTFPGPDLPGVDLVLPDIR
FLASERKNLKAIIITHAHEDHYGALADLWPGLNVPVYASGFTSGLLEAKRNFEKAKIGEV
PVTPFKAGDTINVGPFSIEGVAVNHSIPEPMSLMIRTPVGNVIHTGDWKIDHEPSLGPLT
DETRFRQLGDEGVLALMCDSTNALRDGVSPSEKDVSESLRKIIENAEGRVAITTFSSNVG
RIRTVAEAAEAAGREVLLLGSSLKRVVNVAQDIGLMEGVKPFISEDEYGYIPRDKVVVIL
TGSQGEARAALAKLSRDEMRNVAFAAGDIVVFSSRAIPGNEKAIQDIKNGLVEQGVHIIT
DTEALVHVSGHPRRNELQRMYEWTRPKIVVPVHGEATHLTAHKELAEQSGIALVPRVRNG
DILRLAPGPVEVIGEAPHGRIYKDGTLIGDFDEMGIGERKKLSYVGHVAVNVVLDARYDI
VGEPDLISIGLPTYDDEGEDMEDTLFDAAVSAIESIPRARRKDIDMLQEAVRRAIRSAAN
NTWGKKPLVTAFVTKV
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaacaggacgaactggtattcctgcctctgggcggcgtcggtgagattggcatg
aatctcgctctctacggctacggcccgcccgagcatcgccagtggatcatggtcgattgt
ggcgtcacttttcccgggcctgacctgccgggcgtcgacctcgtattgcccgatatccgc
ttcctcgccagcgaacgaaagaacctcaaggcgatcatcatcacccatgcgcatgaagac
cattatggtgcgctcgccgacctctggcccggcctcaacgtgccggtctatgcctctggt
tttacatcaggtctgctcgaagccaagcgcaatttcgagaaggctaagatcggcgaagtg
ccggtgacgccgttcaaggccggcgatacgatcaatgtcggccccttcagcatcgaaggc
gtcgccgtcaaccattcgatccccgagccgatgtcgctgatgatccgcacgccggtcggc
aatgtcatccataccggcgactggaagatcgaccacgagccttcgctcgggccgctgacc
gacgagacacgtttccgccagctcggcgatgagggcgtgctagcgctgatgtgcgattcc
accaatgcgctacgcgacggtgtttcgccctccgagaaggatgtgtcggaaagcctgcgc
aagatcatcgagaatgccgagggccgggtggcgatcaccaccttctcttcgaatgtcggg
cgtatccgcaccgttgccgaagctgccgaggcggcaggccgcgaagtgctgctgctcggc
agttcgctcaagcgcgtcgtcaacgtcgcccaggatatcggcctgatggaaggcgtgaag
cccttcatctccgaggacgaatacggctacatcccgcgtgacaaggtcgtcgtcatcctg
accggcagccagggcgaggcgcgggctgcccttgccaagctctcgcgcgacgagatgcgc
aatgtggcgtttgcggcgggcgatatcgtcgtcttttcctcgcgcgccattcccggcaac
gagaaggcgatccaggacatcaagaacggcctcgtcgagcagggtgtgcacatcatcacg
gataccgaggcgctggtccacgtttccggtcatccgcgccgcaacgagttgcagcggatg
tatgagtggacgcggccgaagatcgtcgtgccggtgcatggcgaggcaacacatctgacg
gcgcataaggaacttgccgagcaatccggcatcgcactggtgccgcgggtgcgcaacggc
gatatcctgcggctggcgccgggtcccgtcgaggtgatcggcgaggcgccgcatggccgg
atttataaggatggcacgctgatcggcgatttcgacgagatgggcatcggcgagcgcaag
aagctctcctatgtcggccatgtcgcggtcaacgtcgtgctcgacgcccgctatgacatc
gtcggcgaaccagacctcatttcgatcggcctgccgacctacgatgacgagggcgaggat
atggaggatacgctcttcgacgcggcggtcagcgccatcgagagcattccgcgcgcccgc
cgcaaggatatcgacatgctgcaggaggccgtgcgccgcgccatccgctcggccgcgaac
aacacctggggcaagaaacctcttgtcaccgccttcgtcaccaaggtttga
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