Rhodobacterales bacterium HKCCA1288: I3V23_08515
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Entry
I3V23_08515 CDS
T09602
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rbx
Rhodobacterales bacterium HKCCA1288
Pathway
rbx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I3V23_08515 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbx03019
]
I3V23_08515 (rnr)
03016 Transfer RNA biogenesis [BR:
rbx03016
]
I3V23_08515 (rnr)
Enzymes [BR:
rbx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
I3V23_08515 (rnr)
Messenger RNA biogenesis [BR:
rbx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I3V23_08515 (rnr)
Transfer RNA biogenesis [BR:
rbx03016
]
Prokaryotic type
tRNA degradation factors
I3V23_08515 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
LexA_DNA_bind
MarR
MarR_2
Motif
Other DBs
NCBI-ProteinID:
QPI84637
UniProt:
A0A7S9Z839
LinkDB
All DBs
Position
1732200..1734458
Genome browser
AA seq
752 aa
AA seq
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MSAIPSKSEILQWISDHPHASSKRDIAKAFGIKGAARIDLKRLLKELEEEGHLRRTKKTY
ADPDKLPPVAILTVLAEDSAGDQFCRPMEWQGEGDAPKILYVPREADPALGEGDRILARL
QEVHGEDHNYLARLIRRIGTNPRKFIGIFRTTSEGGRILPVTKGSDKEWRVASDATLSAK
DGELVEAELAGPKSRMGLPRARIVTRLGDPSAPKAVSLIAIHEHGLRDNFPDEVIAEADK
AKPASKSGREDLTNLPFVTIDPSDARDHDDACYAHADPDPKNKGGHIIWVAIADVAHYVR
AGSALDREAKKRGNSAYFPDRVVPMLPDRLSGDLCSLHEGVLRPCLAVRMVIDATGEKKA
QSFHRGLMRSVASLSYEEAQAAQDGAPTPRCETLMEPVIAPLFAAYEALKTARARRQPLD
LDLPERRIILSEEGEVESVAFRDRLDAHRLIEEFMVLANVAAAETLIAKKSPLLFRVHEE
PDPDKLDALRETAATAGLVLAKGQVLMTRHLNALLAQAEGTDHDELINISTLRSMQQAYY
HPENFGHFGLALRAYAHFTSPIRRYADLIVHRALISSHGFGKDGLSAEDIETLDATAKQI
SEAERRAMVAERDTTDRYLAAYLKDRVGAEFTGRISGVARFGAFVKLDETGADGLLPVRS
LGREFFHFDADTQTLMGADTGLTLGIGDRVLVRLTEALPVTGGIGLELLEIHGTQHRPNT
GGKRGKRGFGGRRSGQAEAKKRKLRKLKKRKS
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgatcccatcaaaaagcgaaatcctgcaatggatttccgatcatccacatgcc
agttcaaaacgcgatatcgcgaaggcttttggtatcaaaggggccgcgcgcattgatctc
aagcgccttctcaaagagcttgaagaagaaggccatctgcgccgcaccaagaaaacctat
gccgaccccgataaattaccacccgtggccatcctgacagttttggccgaagatagcgca
ggggatcaattctgccgtccgatggaatggcagggcgagggggacgcgccaaaaattcta
tatgttccccgtgaggctgatcctgccttgggtgaaggcgaccgtatccttgctcgtttg
caagaggttcatggcgaagaccacaattacctcgcgcgccttattcggcgcatcggcacc
aatccccgcaaattcattggtattttccgcacaacctcggaaggtgggcgtattttgccc
gtcaccaaaggatcagacaaagaatggcgcgtagcctcagatgccaccttatccgcaaaa
gatggcgagttggttgaggccgaacttgcagggccaaagtcccgcatgggcctgccgcgg
gcgcgcatcgtgacacggcttggcgatccaagcgcgccgaaggcggtcagccttattgct
atccatgaacatgggctgcgcgataatttcccagacgaggtcatcgcagaggctgacaaa
gccaaaccagcatcaaaatcaggtcgcgaagatttgaccaatctgccattcgtgaccatc
gacccctcagacgcgcgcgaccatgatgatgcgtgctatgcgcatgcagaccctgacccg
aagaacaaaggcggtcatatcatctgggtcgcgattgccgatgtcgcgcattatgtgcgc
gcgggcagtgcgcttgatcgcgaggcaaaaaagcgcggtaattctgcctatttcccagat
cgcgttgtgccgatgctgcctgaccgattgtcgggggatctttgctctttgcatgagggc
gttttgcgcccctgtcttgccgtgcgcatggtcattgatgcaacaggtgagaaaaaggcg
caaagctttcatcgcgggcttatgcgctcggtcgcatctctgtcctacgaagaggcgcag
gccgcccaagacggcgccccaaccccgcgttgcgagactttgatggagcccgtcatcgca
cccctctttgcggcttatgaggcactcaaaacggcgcgggcgcgccgccaaccgcttgac
cttgatcttccagagcggcgtatcattctctccgaagaaggcgaggttgaaagcgtggcc
ttccgcgacaggctagacgcgcatcgcctgattgaagaattcatggttttggccaatgtc
gccgcagctgaaactttgattgcgaaaaaatcgccgctcttgttccgcgttcacgaagaa
cctgatcccgacaagctggacgctttgcgcgagacagccgccacagcggggcttgttttg
gcgaaaggtcaggtgttgatgacccgccatctcaatgcgcttttggcgcaggccgagggc
acggatcacgatgagctgatcaatatctcaaccttgcgctcaatgcagcaggcctattac
caccccgaaaatttcggccattttggccttgctctgcgggcttatgcccatttcacatcc
cccattcgccgttatgcagatttgatcgtgcatcgggcgctgatctcgtctcacggcttt
ggcaaggatggcttgagcgccgaagatatcgaaacgctggacgccaccgccaaacaaatc
tccgaagctgagcgccgcgcgatggtggccgagcgagacacgaccgaccgctatctggcc
gcctatctcaaggatcgcgtaggggctgaattcacaggtcgcatttcaggcgtggcgcgg
ttcggcgcattcgtgaaactggatgaaacaggcgcagacggcttattgcccgtgcgcagc
ttgggccgcgagtttttccattttgatgcagacacccagacattgatgggtgcggatacg
ggtttaaccttaggcattggggatcgcgtcttggtgcgcctgacggaggccttgcccgtc
acaggcggcatcggtcttgagctactagaaattcacggcacgcaacaccgccccaacaca
ggcggcaaacgcggcaagcgcggctttggcgggcgcagatcgggccaagctgaagccaaa
aagcgtaaattgcgcaaattgaaaaagcgaaaatcctaa
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