Rhodobacterales bacterium HKCCA1288: I3V23_12705
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Entry
I3V23_12705 CDS
T09602
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rbx
Rhodobacterales bacterium HKCCA1288
Pathway
rbx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I3V23_12705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbx03019
]
I3V23_12705
Enzymes [BR:
rbx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I3V23_12705
Messenger RNA biogenesis [BR:
rbx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I3V23_12705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Utp25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
QPI85382
LinkDB
All DBs
Position
2577787..2579070
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AA seq
427 aa
AA seq
DB search
MFDFDMLGLEPTLNAALKAANLSEPTPIQNQAIPLALEGHDIMGLAQTGTGKTLAFGLPL
INHLLGKQGKPEPKTVKALVLAPTRELVNQIADSLKPLTAGSKLRVHSVVGGQSIPKQIN
LLARGTDILVATPGRLIDLLNRRAVDLSQTRHLVLDEADQMLDLGFIHALRQIAPHLATP
RQTMLFSATMPKQMEELSSAYLNNPRRVQVSPPGKAADKITQSVHFVSKGDKPAKLREIL
SRDLDALTLVFARTKHGAEKLMKGLVEDGYKAASIHGNKSQGQRDRAIKQFRAGEITVLV
ATDVAARGIDIPGVAYVVNYDLPDVPENYVHRIGRTARAGREGEAIAFCAADEMDLLRQV
QKLMKLEIPVASGSAPEGAEQGGGRPHRGGPRRGFKPKANAGHGAADGKPRHRRRGKPAR
GPRQKAA
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgatttcgatatgctgggacttgagcccacattgaacgcggcgttgaaggccgca
aacctgtccgaacccaccccgatccagaaccaagccattcctttggccttggaagggcac
gatattatgggtctggcgcaaacaggcacaggcaagacgctggccttcggtttgccgctg
atcaaccatttgttgggcaagcagggcaagcctgaaccaaaaaccgtcaaggcattggtg
cttgcgccaacgcgtgaattggtcaaccaaatcgcagacagcctcaagcctctgacggca
gggtccaagttgcgggttcattctgtggtgggggggcaatccattcccaagcagatcaac
cttcttgcgcgcggcactgatattttggtggcaacacccggtcgcttgattgacctgctc
aatcgccgcgcggttgatctcagccaaacgcgccatctggttttggacgaggccgatcaa
atgcttgatctgggctttatccatgcgctgcgccaaatcgcgccgcatttggcaaccccg
cgccaaaccatgctgttctcggccaccatgcccaagcagatggaagaattgtcgagcgcc
tatttgaacaacccccgccgtgttcaagtttcgcctccaggaaaagcggcagataagatc
acgcagtcggtgcattttgtttctaagggcgataaacccgccaaactgcgcgaaatcctg
agccgcgatttggacgcgctgacgcttgtttttgcgcgcacaaaacatggtgcggaaaag
ctgatgaaaggcttggttgaggatggctataaggccgcatcgatccacggcaacaaaagc
caaggtcagcgcgatcgtgccatcaaacaattccgcgcgggtgagatcactgtgttggtc
gcaaccgatgttgcggcccgtggcatcgatatcccaggtgtggcttatgtggtcaattat
gatttgccagatgtgcctgagaattacgtccatcgtattggccgcacggcccgcgcaggg
cgcgagggagaggcaattgccttttgcgccgctgatgaaatggatttgctgcgccaagtg
caaaagctgatgaaactcgaaatccccgtggccagcggcagcgcgcccgagggggccgag
caaggtggcggtcgtccccatcgcggcggccctcgccgtggctttaagccaaaggccaat
gcagggcatggcgcggcggatggaaaaccgcgtcatcgccgccgtggcaaacccgcccgc
gggccacgccaaaaggcagcataa
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