Rhodococcus pyridinivorans TG9: CEJ39_04935
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Entry
CEJ39_04935 CDS
T05830
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rby
Rhodococcus pyridinivorans TG9
Brite
KEGG Orthology (KO) [BR:
rby00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rby03032
]
CEJ39_04935 (topA)
03400 DNA repair and recombination proteins [BR:
rby03400
]
CEJ39_04935 (topA)
Enzymes [BR:
rby01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CEJ39_04935 (topA)
DNA replication proteins [BR:
rby03032
]
Prokaryotic type
DNA Topoisomerases
CEJ39_04935 (topA)
DNA repair and recombination proteins [BR:
rby03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CEJ39_04935 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
AWZ26833
LinkDB
All DBs
Position
1040549..1043494
Genome browser
AA seq
981 aa
AA seq
DB search
MAAREKSTAGGSSGTRRLVIVESPTKARKIAPYLGRDYVVEASVGHIRDLPRGAADVPAK
YKGESWARLGVDVDHDFEPLYVVSADKKTKVSELKSLLKDADELYLATDPDREGEAIAWH
LLETLKPKVPVRRMVFHEITEPAIRAAAENTRDLDNDLVDAQETRRILDRLYGYEVSPVL
WKKVMPRLSAGRVQSVATRVIVQRERERMAFKSAEYWDIAATMDAGADASPRSFGARLVN
VDGSRVASGRDFGPDGNLKSNGVVVLDEDRARRLAEALAGVALTVSSAESKPYTRKPYAP
FMTSTLQQEAGRKLRFSSERTMRTAQRLYENGYITYMRTDSTTLSESAIAAARAQATQLY
GAEFVHPTPRQYTRKVKNAQEAHEAIRPAGDVFATPGELHARLDGDEFKLYELIWQRTVA
SQMADARGTTLTLRITGTAGTGEECTFSSSGRTITFPGFLKAYVESVDEEAGGQSDDAES
RLPNLSEGASVTATKLDPDGHSTNPPARYTEASLIKTLEELGIGRPSTYASIIKTILDRG
YVYKRGSALVPSWVAFAVIGLLEAHFAQLVDYDFTAGMEDDLDEIASGHRQRTDWLTRFY
FGSDDGHEESVARKGGLKKLVGENLEDIDAREINSIRLFDDSEGREIHVRVGRFGPYLER
MVTDPNNPDAEPTSQRANLPDDLPPDELTLEYAEKLFSTPQEGRVLGVDPSTGYEIVARE
GRFGPYVTELIPDPEPEPEPEPDVTPIPVDELGSEGEGGTKTATKKAVAKKAAKKAPAKK
TGPKPRTGSLFKTMDLSTVTLEDALKLLSLPRVVGVDPESGDEITAQNGRYGPYLKKGSD
SRSLANEEQIFTITLDEALKIYAEPKRRGRQAAATPPLRELGTDPVSGKQMVIKDGRFGP
YVTDGETNASLRKGDEVESITDERASELLADRRARGPAKKTAKKTAAKKTAAKKTAAKKT
TAKKTAAKKTTKKAAAKKTTD
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
gtggcagcacgggagaagagcactgcgggcggttcgtcgggcacgcgtcggctcgtgatc
gtcgagtccccgaccaaggcgaggaagatcgccccctacctcggccgcgactacgtcgtc
gaggcatcggtcggtcacatccgcgacctgccgcgcggtgccgcggacgtccccgccaag
tacaagggcgagtcgtgggcgcgcctcggtgtcgacgtcgatcacgacttcgaacccctc
tacgtcgtcagcgccgacaagaagaccaaggtctcggagctgaagagcctgctcaaggac
gccgacgagctctacctcgccaccgaccccgaccgcgagggcgaggccatcgcctggcac
ctgctcgagaccctgaagcccaaggtgccggtccggcgcatggtcttccacgagatcacc
gagcccgctatccgcgcggccgccgagaacacccgcgacctcgacaacgacctggtcgac
gcgcaggagacccgccgcatcctcgaccgtctctacggctacgaggtcagtcccgtgctg
tggaagaaggtcatgccccgtctgtcggcgggtcgtgtgcagtcggtggcgacccgcgtg
atcgtgcagcgcgaacgcgagcgcatggcgttcaagtccgctgagtactgggacatcgcg
gccacgatggacgccggcgccgacgcgagcccccggtcgttcggtgcccgcctggtcaac
gtcgacggttcccgtgtcgcctcgggtcgcgacttcgggcccgacgggaacctgaagtcg
aacggtgtcgtcgtcctcgacgaggaccgcgcccgccgcctcgcggaggcactcgccggt
gtcgcgttgacggtgtcgtcggccgagagcaagccgtacacccgcaagccctacgcgccg
ttcatgacgtcgacgctgcagcaggaggcgggccgcaagctgcggttctcgtccgagcgc
accatgcgcaccgcgcagcgtctgtacgagaacggctacatcacctacatgcgtaccgac
tcgacgacgctgtccgagtcggcgatcgcggcggcccgcgcacaggccacccagctgtac
ggtgccgagttcgtccatccgacgccgcgccagtacacccgcaaggtcaagaacgcgcag
gaagcacacgaggcgatccgtcccgccggcgacgtcttcgcgacccccggcgagctgcac
gcgcgcctcgacggcgacgagttcaagctctacgagctcatctggcagcgcaccgtcgcc
tcccagatggccgacgcgcggggcaccacgctgacgctgcgcatcaccggcaccgcgggc
accggcgaggagtgcaccttctcgtcgtcgggccgcaccatcacgttcccgggcttcctc
aaggcatacgtcgagagtgtcgacgaggaagccggtggtcagtcggacgacgcggagtcg
cgcctgccgaacctgtccgagggtgcctcggtcaccgcgacgaagctcgatccggacggt
cactccaccaacccgccggcccggtacaccgaggcgagcctgatcaagacgctcgaagag
ctcgggatcggccggccctcgacctacgcgtcgatcatcaagaccatcctcgaccgcggc
tacgtctacaagcgtggcagcgcgctcgtcccgtcgtgggtggcgttcgccgtcatcggc
ctgctcgaggcgcacttcgcccagctcgtcgactacgacttcacggccgggatggaggac
gatctcgacgagatcgcctccggtcaccggcagcgcaccgactggctgacgcggttctac
ttcggcagcgacgacggtcacgaggagtcggtcgcgcgcaagggcggcctgaagaagctg
gtgggggagaacctcgaggacatcgacgcccgcgagatcaactccatccgcctgttcgac
gactccgagggtcgcgagatccacgtgcgtgtgggccgcttcggtccgtacctcgaacgg
atggtcaccgacccgaacaaccccgacgccgagccgacctcgcagcgcgcgaacctgccc
gacgacctgccgccggacgagctcaccctcgaatacgccgagaaactcttctcgacgccg
caggagggacgtgtcctcggtgtcgatccgtcgaccggctacgagatcgtcgcgcgggag
ggtcgcttcggtccctacgtgaccgagctgatccccgatccggaacccgagcccgaaccg
gagccggacgtcacgcccatccccgtcgatgaactcggctcggagggagagggcggcacg
aagaccgccaccaagaaggccgtcgccaagaaggcggcgaagaaggctcccgcgaagaag
accggtccgaagccgcgcacgggttcgctgttcaagacgatggacctgtccacggtcacc
ctggaagacgccctgaaactgctgtcgctgccgcgcgtggtgggtgtcgatccggagtcc
ggcgacgagatcaccgcccagaacggccgctacggtccgtacctgaagaagggcagcgac
tcgcggtcgctcgccaacgaggagcagatcttcacgatcacgctcgacgaggcgctgaag
atctacgcggagccgaagcgccgcggccggcaggccgccgccacgccgccgctgcgcgag
ctgggcaccgacccggtcagcggcaagcagatggtgatcaaggacggccggttcggcccg
tacgtcaccgacggtgagacgaacgcgagcctgcgcaagggcgacgaggtcgagtccatc
accgacgagcgggcatccgaactgctcgccgaccgtcgggcacgcggtccggccaagaag
accgcgaagaagacagcggcgaagaagacggccgccaagaagacggccgccaagaagacc
accgccaagaagacggcggcgaagaagacgacaaagaaggccgccgcgaagaagacgacg
gactga
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