Rhodococcus pyridinivorans TG9: CEJ39_08675
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Entry
CEJ39_08675 CDS
T05830
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
rby
Rhodococcus pyridinivorans TG9
Pathway
rby03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rby00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CEJ39_08675 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rby03400
]
CEJ39_08675 (recD)
Enzymes [BR:
rby01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CEJ39_08675 (recD)
DNA repair and recombination proteins [BR:
rby03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CEJ39_08675 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
RecD_N
AAA_11
Viral_helicase1
UvrD-helicase
Helicase_RecD
SH3_13
AAA_22
AAA_16
TraI_hel_assoc_N
AAA_24
AAA_28
Motif
Other DBs
NCBI-ProteinID:
AWZ24246
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All DBs
Position
1826224..1828113
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AA seq
629 aa
AA seq
DB search
MIESMTDVRIAQRGKGALRQFNEVGALSAADVHVALRLAALGGEDDPHVHLATALAVRAV
RSGSVCLDLTRFREVTVDEDADGHPVVDPASLPWPRDEDVLAALRRSPLVVGGDRGPLRP
LRLVDTAEGPLLYLDRYFRQEQTIRRVLAERTATFPDLDEERIAATLDELFHHPEDPSRP
APAPDRQRVAAALAATRPTTVIAGGPGTGKTHTVARILALLTRLYGHELRIGLAAPTGKA
AARLQESVREQETELGLPPNLTAMTVHRMLGWQRGRTRFRYHAGNHLPYDVIVVDETSMV
SLTMMCRLLEAVRPDTRLVLVGDPDQLASVDAGAVLADLVGRPVSGTLDPVFERVVARDV
AAADDPAEAAFTPAQRARLGGGVVRLSRGRRFGGAIAELAVAVRKGAGDEVLDILRRGDP
EVSFVAPSDLDALRDDIVRSAAEVTKSAETGDVETALKRFEEHRLLCAHRDGPAGVQWWA
RQAAEWIGEAAGQRLDPESWYPGRPLLVTANDHDMQIYNGDTGVVVRRGDELVAAFARGE
TPFELRPSQLPAVSTVYAMTIHRSQGSQYGTVSVVLPDSGSALLTRELLYTAITRARSHV
RIIGTEDAVRAGVARQVLRASGLRREIRV
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgagtccatgaccgacgttcggatcgcccagcgcggcaagggcgctctgcggcag
ttcaacgaggtgggcgcactctccgccgccgacgtgcacgtcgccctgcgactcgcggcg
ctcggcggcgaggacgacccgcacgtgcatctcgccaccgcgctggcggtgcgtgccgtg
cgatccgggtcggtgtgcctcgacctcacccgtttccgcgaggtcacggtcgacgaggac
gcggacggccatcccgtcgtcgaccccgcgagcctgccgtggcctcgcgacgaggacgtg
ctcgcggcgctgcgtcgcagccccctcgtggtcggtggcgaccgcggacctctgcgtccg
ctgcgtctcgtcgataccgcggaaggtccgctgctgtatctcgaccggtacttccggcag
gagcagacgatccgccgggtgctcgccgagcgcacggcgacgttccccgacctcgacgag
gagcgcatcgcggcgacactcgacgagctgttccaccatcccgaggatccctcccggccc
gcgccggcacccgatcgtcagcgcgtcgcggcggcactcgccgccacccgaccgaccacg
gtgatcgcgggcgggccgggcaccggcaagacccacaccgtcgcgcggatcctcgcgctg
ctcacccgcctgtacggacacgaactgcgcatcggcctggccgctcccaccggcaaggcc
gctgcgcgcctccaggaatcggtgcgcgagcaggagaccgagctgggtctgccgccgaat
ctcaccgccatgaccgtgcaccggatgctcggctggcagcgcggccgcacccgcttccgc
taccacgcgggcaaccacctgccgtacgacgtgatcgtcgtcgacgagacgtcgatggtg
tcgctgacgatgatgtgccgcctgctcgaggcggtgcggcccgacacccggctcgtcctc
gtgggcgaccccgaccagctcgcctcggtcgacgccggtgcggtgcttgccgacctcgtg
gggcgcccggtcagcggcaccctcgatccggtcttcgaacgggtcgtcgcccgcgatgtg
gcggccgccgacgaccccgccgaggcggccttcactccggcccaacgcgcccggctcggt
ggcggtgtcgtgcggctgagtcgcggccgccgcttcggtggtgcgatcgccgagctggcg
gtggccgtccgtaagggcgccggcgacgaggtgctcgacatcctgcgcaggggcgacccg
gaggtctcgttcgtggccccctccgacctcgacgccctacgcgacgacatcgtccgctcc
gccgctgaggtcaccaagtccgccgagacgggggacgtcgagacggcgctgaagcggttc
gaggaacatcggttgctgtgcgcgcaccgcgacggcccggccggcgtgcagtggtgggcg
cggcaggccgccgagtggatcggggaggccgcggggcagcgactcgatcccgagagctgg
tatccgggccggccgttgctcgtcaccgcgaacgaccatgacatgcagatctacaacggc
gacaccggcgtggtcgtgcggcgcggcgacgaactcgtcgcggcgttcgcacgcggcgag
acgccgttcgaactgcgcccgagtcagctcccggcggtgagcaccgtctacgcgatgacg
atccaccgcagccagggcagtcagtacggcaccgtctcggtggtgctgcccgattccgga
tcggcgctgctcacccgcgaactgctgtacaccgcgatcacgcgtgcgcggtcgcacgtg
cggatcatcgggaccgaggatgcggtacgcgcgggcgtggcacggcaggtgctccgagcg
agtgggctgcggcgggagatccgcgtgtag
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