Rhodococcus pyridinivorans TG9: CEJ39_11385
Help
Entry
CEJ39_11385 CDS
T05830
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rby
Rhodococcus pyridinivorans TG9
Pathway
rby03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rby00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CEJ39_11385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rby03019
]
CEJ39_11385
03009 Ribosome biogenesis [BR:
rby03009
]
CEJ39_11385
Enzymes [BR:
rby01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CEJ39_11385
Messenger RNA biogenesis [BR:
rby03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CEJ39_11385
Ribosome biogenesis [BR:
rby03009
]
Prokaryotic type
rRNA processing factors
CEJ39_11385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AWZ24704
LinkDB
All DBs
Position
2419860..2423165
Genome browser
AA seq
1101 aa
AA seq
DB search
MADQEPPENNSIEASDAGGRNLLGLPAKIRVHALAKLLGLTSKQVIAKAAERGTELRSAH
STLPRDVAEDLHAALSDDTGTAEPAVQEAETAPEAETAPEPAAETTPEPAAEAAETAEAE
PVESDELRPAEKTADETAPQAVEIPSVGGPTGLFTSVERSTPLFEMPEPSTTAEPIVAAP
LFLQPEVPSPAEGEEETRPRRRRARRGKDTEQAPAEDEQQTAEPAAESTEEAPSHQADED
QDDQPRRRRRGRRGRGRGRGDGTDTDQQDETTATGEDSESAAAETEKSAAAETEKSTAAE
TPAEETAGTEESTSDESASGDEQSSDEHDTDDEQGGGTSRRRRRRRRRRGSDTDTASTDD
DSVPTVVHEREPRPKSRAKDEVQGISGSTRLEAKRQRRRDGREAGRRRPPILTESEFLAR
REAVDRVMVVRERTGGSHAGMTQVAVLEDGILVEHFVTTSGSASMVGNIYLGRVQNVLPS
MEAAFIDIGRGRNGVLYAGEVNWEAAGLGGNSRKIEQALKPGDQVVVQVSKDPVGHKGAR
LTTQISLAGRFLVYVPGGSSTGISRKLPDTERKRLKDILREIVPSEAGVIIRTAAEGVSE
EELSRDVTRLQTQWESIREQSEKLQADASGQPKTLYEEPDLLVKVVRDLFNEDFSKLVIE
GDSAWNTVESYIRTVAPDLLPRVERYRSENSVDVFGAHRIDEQLAKALDRKVWLPSGGTL
VIDRTEAMTVIDVNTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVVDFIDM
VLESNRDLVLRRLTEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLVEAFSTTCEHCSGR
GLIVHSEPIESKSSDDSGRSSGGGSRRKRGRDKSSQEPAAETHTTPSPEEVVKRAAHPVA
LAMAAHNSTPAADAPAAEPAATVTASEAASAPAGDVDPVKITEPLRAVEPEKVAAPTKEP
VAGEDATTVTTASDEPAEIEAEVAAAEAAVAETAVPEAAVSETAVSGAGESTDGAASVEA
AGPAPRRRRARRVARAAAAPAGDGGPTAKVFVVPATTGSSTGAESDSRPSTPVETPVEIV
RRPRSRRAAGRPAGPPVDAEA
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
gtggccgatcaagagccgccggagaacaactcgatcgaagcgtcggacgcagggggacgg
aacctcctcggtctgcctgccaagatccgcgtccatgccctcgccaagctgctggggctg
accagtaagcaggtgatcgcgaaagccgccgagcgcggcaccgagctgcgcagtgcgcac
tcgaccctcccacgcgacgtcgcggaggacctgcacgctgcgttgagcgacgacacgggc
acggccgagcccgccgtgcaggaagccgagacggctcccgaggccgagaccgcccccgag
cctgccgcggagacgactcccgagcctgcggccgaggctgcggagaccgccgaggccgag
ccggtcgagagcgacgagctgcgacccgccgagaagaccgcggacgagaccgcaccgcag
gccgtcgagatcccctccgtcggaggacccaccgggttgttcacgtcggtggagcggagc
acgccgctgttcgagatgcccgagccgtccaccacggccgagccgatcgtcgctgcaccg
ctgttcctccagcccgaggtaccctcgcctgccgagggagaggaggagacccgcccgcgt
cgccggcgcgcacgccgcggaaaggacaccgagcaggcaccggccgaggacgagcagcag
accgccgagccggccgccgagtccaccgaggaagcgccgtcgcaccaggcggacgaagac
caggacgaccagccgcgtcgtcgacgacgcggacgtcgcggtcgtggacgtggacgcggg
gacggcaccgacaccgaccagcaggacgagacgaccgcgaccggcgaggactccgagtcc
gccgccgcggagacggagaagtccgcggccgcggagacggagaagtccaccgcagcggag
actcccgccgaggagaccgccggcaccgaggagagcacctccgacgagtccgcctcgggc
gacgagcagagcagcgacgagcacgacaccgacgacgagcagggcgggggcacgtcccgt
cgtcgccgccgtcgccgtcgccgtcgcggttccgacaccgacaccgcgagcaccgacgac
gactcggttcccacggtcgtccacgagcgggagccgcgtccgaagagccgcgccaaggac
gaggtccagggcatcagcggttcgacgcgcctcgaggcgaagcgtcagcgtcgtcgcgac
ggtcgcgaggccggtcgccgccggcccccgatcctcaccgaatccgagttcctcgcccgc
cgcgaggctgtcgaccgggtcatggtcgtgcgcgaacgcacgggcggttcccacgcgggc
atgacgcaggtcgcggtgctcgaggacggcatcctcgtcgagcacttcgtcacgacctcc
ggttcggcgtcgatggtcggcaacatctacctcggtcgcgtgcagaacgtcctcccgtcc
atggaggcggcgttcatcgacatcggccgtggccgcaacggcgtgctctacgcgggtgag
gtgaactgggaggccgccggcctcggaggcaactcccgcaagatcgagcaggccctcaag
cccggcgaccaggtggtcgtgcaggtcagcaaggacccggtcggtcacaagggcgcgcgt
ttgaccacccagatcagcctcgccggacgcttcctggtctacgtgccgggaggttcgtcc
acgggcatcagccgcaagctccccgacaccgagcgcaagcgtctgaaggacatcctccgc
gagatcgtcccctccgaggcgggcgtgatcatccgtaccgccgccgagggcgtgagcgag
gaggaactctcgcgcgacgtcacccgcctgcagacgcagtgggagtcgatccgcgagcag
tccgagaagctgcaggccgacgcctcgggccagccgaagacgctctacgaggagccggat
ctgctcgtgaaggtcgtgcgagacctgttcaacgaggacttctccaagctcgtcatcgag
ggcgactcggcgtggaacaccgtcgagagctacatccggacggtcgcacccgacctgctg
ccgcgcgtcgagcgctaccgttcggagaactcggtggacgtcttcggtgcgcaccgcatc
gacgagcagctcgcgaaggctctcgaccgcaaggtgtggctgccgtccggcggcacgctc
gtcatcgaccgcaccgaggcgatgaccgtcatcgatgtcaacaccggcaagttcaccggt
tccggcggcaacctcgaggagacggtcacccgtaacaacctcgaggcggccgaggagatc
gtccgccagatgcgcctgcgcgacatcggcggcatgatcgtcgtcgacttcatcgacatg
gtcctcgagtcgaaccgcgacctcgtactgcgtcgcctgaccgaggccctcggccgggac
cgcacccgccaccaggtctcggaggtcacctcgctcggcctggtccagatgacgcgcaag
cggctcgggaccggtctcgtcgaggcgttctccaccacctgtgagcactgcagcggccgc
ggcctcatcgtgcactcggagccgatcgagtcgaagtcctcggacgactccggtcgttcg
tccggcggtggttcgcggcgtaagcgtggacgcgacaagagttcgcaggagcccgccgcc
gagacgcacacgacgccgtcgcccgaagaggtcgtcaagcgtgccgcgcaccccgtcgcg
ctcgcgatggccgcgcacaactcgacaccggccgcggacgctccggctgcagagccggca
gcgaccgtgaccgcatccgaggcggcgtccgcacctgcgggcgacgtcgacccggtcaag
atcaccgagccgctgcgggccgtcgagcccgagaaggtcgccgcaccgacgaaggagccc
gtcgcaggggaggacgccaccacggtgacgaccgcctccgacgagcccgccgagatcgag
gcagaggtcgcagcagccgaagccgcggtcgcggagaccgctgttcccgaggctgccgtg
tccgagacggccgtctccggcgcaggggagagcaccgacggagcggcttccgtcgaggcc
gcaggaccggctccgcgtcgccgtcgggcacgcagggtcgcccgggcggccgcagcgccc
gccggggacggtgggcctacagccaaggtgttcgtcgtccccgcgacgaccgggtcgtcc
acgggggccgagtcggactcccggccgagcacaccggtcgagacgccggtggagatcgtg
cggcgaccgcgttcgcggcgtgccgcagggcgccccgccggacctccggtggacgccgaa
gcgtga
DBGET
integrated database retrieval system
