Rhodococcus pyridinivorans TG9: CEJ39_11530
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Entry
CEJ39_11530 CDS
T05830
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rby
Rhodococcus pyridinivorans TG9
Pathway
rby03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rby00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CEJ39_11530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rby03400
]
CEJ39_11530
Enzymes [BR:
rby01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CEJ39_11530
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CEJ39_11530
DNA repair and recombination proteins [BR:
rby03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CEJ39_11530
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
TackOD1
DUF5830
DUF4998
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AWZ24732
LinkDB
All DBs
Position
2453504..2454367
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AA seq
287 aa
AA seq
DB search
MPELPEVEVVRRGLDAHVVGATVDSVQVLHPRAVRRHEPGPRDLALQVTGQKVASVERRG
KYMWLVLEPADLALVVHLGMSGQMLVQPPTVPDEKHLRIRAVLDNGADLRFVDQRTFGGW
ALAPLVEVDGDRLPLPVAHIARDPMDPRFDPDAVVAVLRTKHTEIKRALLDQTVVSGIGN
IYADEALWRARIHGNRPTDALSRPKLRSALDAATEVMAEALGQGGTSFDALYVNVNGESG
YFERSLNVYGRENEPCRRCGAPIRREKFMNRSSYSCPKCQPRPRTTR
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgaacttcccgaggtcgaggtggtccgtcgcggactcgacgcgcacgtcgtcggc
gcgactgtggactcggtgcaggtgctgcatccgcgtgccgtccgacggcacgagcccggt
ccgcgcgatctcgcactgcaggtgaccggtcagaaggtcgcttcggtcgagcgccgcggc
aagtacatgtggctcgtgctcgaaccggccgatctggctctcgtggtgcatctggggatg
agcgggcagatgctcgtgcagcctccgaccgtgccggacgagaagcatctgcgtatccgc
gccgtcctcgacaacggtgccgatctgcgtttcgtcgaccagcgcaccttcggaggctgg
gccctggccccgctcgtggaggtggacggtgatcgtctgccgctgccggtcgcgcacatc
gcccgcgacccgatggatccccggttcgacccggatgcggtcgtggccgtgctgcgcacc
aagcacaccgagatcaagcgtgcgctgctcgaccagaccgtcgtctccggcatcggcaac
atctacgccgacgaagcgctgtggcgcgcaaggattcacggcaaccggcccaccgacgcg
ctgtcgcgtccgaagctccggtcggctctcgatgcggccaccgaggtgatggcggaggcc
ctcgggcagggtggtacgtcgttcgacgccctgtatgtcaacgtcaacggggagtccggc
tacttcgagcgttccctgaacgtctacggacgcgagaacgagccgtgccgacgctgcggc
gcgccgatccgccgcgagaagttcatgaaccgctcgtcgtacagctgcccgaagtgtcag
ccacgaccgcgaacgacccggtag
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