Rhodococcus pyridinivorans TG9: CEJ39_11635
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Entry
CEJ39_11635 CDS
T05830
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
rby
Rhodococcus pyridinivorans TG9
Pathway
rby00300
Lysine biosynthesis
rby00470
D-Amino acid metabolism
rby01100
Metabolic pathways
rby01110
Biosynthesis of secondary metabolites
rby01120
Microbial metabolism in diverse environments
rby01230
Biosynthesis of amino acids
Module
rby_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
rby00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
CEJ39_11635 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
CEJ39_11635 (dapF)
Enzymes [BR:
rby01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
CEJ39_11635 (dapF)
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Gene cluster
GFIT
Motif
Pfam:
DAP_epimerase
CntK_N
Motif
Other DBs
NCBI-ProteinID:
AWZ24748
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All DBs
Position
complement(2476689..2477549)
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AA seq
286 aa
AA seq
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MTSTEHLPFTKYTALGNDYLVFDGGHFGTTLDVQQIVRLCDRRFGVGADGILVHCPSLAS
GPFRVRIFNSDGSECERSGNGLRIYAQWLLDIGAVDRDRFEIDCLAGTSPIEVNNDGTLT
VAMGPAVFEPHAIGLTDPSIDPQRFVLDTSAGALDVTALSVGNPHTVVFTPVEPHIQNTL
GPQIATHPLFASGTNVQFVARNDAAGMDIDIWERGSGRTLASGSSACAAAAAALSRGSTT
APVTVRMPGGQLTVDRRGTQIWQTGRAHHVFAGTVRPPSPKAVAAL
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgaccagcactgagcatctccctttcacgaagtacaccgcgctgggcaacgactacctc
gtcttcgacggcggtcacttcggcacgaccttggacgtacagcagatcgtcaggctgtgc
gatcgccgattcggtgtgggcgccgacggtattctcgtccactgcccgtccctggcgagc
gggccgttccgagtgcgcatcttcaattccgacggcagcgaatgcgagcgcagcggcaac
ggattgcgcatctatgctcagtggctgctcgatatcggcgcagtcgatcgcgatcgattc
gagatcgactgcctcgccggaacgtccccgatcgaggtcaacaacgatggcacgctcact
gtggcaatgggaccggcggtgttcgagccccacgcgatcgggctgaccgacccctcgatc
gatccacagcggttcgtgctcgatacttccgccggcgctctcgacgtgaccgcattgtcc
gtcggaaatccacatacggtcgtgttcaccccggtcgagccccatatccagaacaccctc
ggaccgcagatcgccactcatcctctgttcgcctccggcaccaacgtccagttcgtcgca
cggaacgacgcagccgggatggacatcgacatctgggagcgtggatccggccgtactctc
gcctcgggtagcagcgcgtgcgccgccgcggcggccgcactgtcgcgcggttcgaccacc
gccccggtgaccgttcggatgcccggtggccagctcaccgtcgatcggcgcggcacacaa
atttggcagaccggacgggcgcaccatgtgttcgcgggcaccgtccgacccccctccccg
aaggcggtagctgcattatga
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