Rhodococcus pyridinivorans TG9: CEJ39_12190
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Entry
CEJ39_12190 CDS
T05830
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
rby
Rhodococcus pyridinivorans TG9
Pathway
rby03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rby00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CEJ39_12190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rby03019
]
CEJ39_12190
Messenger RNA biogenesis [BR:
rby03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CEJ39_12190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
DUF459
Motif
Other DBs
NCBI-ProteinID:
AWZ24843
LinkDB
All DBs
Position
2590661..2592466
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AA seq
601 aa
AA seq
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MSRPARGRGRATRNAGPPARVPRRVAQNSANPQRPDARIVDPTERLGLPPKAPRDGLRVV
ALGGIGEIGRNMTVFEHQGRLLVVDCGVLFPEDQQPGVDLILPDFRYIEDRMDDVEAIVL
THGHEDHIGAVPFLLRLRPDIPVVGSKFTLALVAAKCREHRQRPNLVEVVEGQTTSHGPF
ECEYFAVNHSIPDAIAVAIRTAAGIVLHTGDIKLDQLPLDNRLTDLAGFSRLGDEGVDLF
LVDSTNAEVPGFVTPEREIGGVLDTVIGKAANRVIVASFASHVHRIQQIVDVAERYNRRV
AFVGRSMVRNMQIAQDLGYLNVPDGLEVDIDTAASLPDDRVVLVSTGSQGEPLSALSRMA
RGEHRQINIRADDLVVLASSLIPGNENSVFAVVNGLAKRGAKVVTQQNAKVHVSGHASAG
ELLYLYNAVRPTNAMPVHGEWRHLRANAALAEATGVPRERIVLAEDGVVVDMVDGLAEIV
GRVPVGHVYVDGLSVGDVGESTLSDRLVLGEGGFISISVAVDAATGRAVSTPEVSGRGFS
DDPDALDEAAQLVDKALNELAAEGVTETHRIAQGIRRVVGRWVAETYRRRPMIVPTVIPV
S
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgagccgccccgcacgcggccggggccgcgccacccgcaacgccggtccgcccgcccgc
gttccgcggcgtgtcgcgcagaactcggcgaacccccagcgtccggacgcccgcatcgtc
gatcccaccgagcgattgggtctgccgccgaaggctcctcgcgacggtctgcgggtcgtc
gcgctcggcggtatcggcgagatcggccgcaacatgacggtcttcgagcaccagggccgg
ctgctcgtcgtcgactgcggggtgctctttcccgaggaccagcagccgggcgtcgacctg
atcctgcccgacttccggtacatcgaggaccggatggacgacgtcgaggcgatcgtcctc
acccacggccacgaggaccacatcggtgccgtgccgttcctcctgcgcctgcgccccgac
atcccggtcgtcgggtccaagttcaccctggcgctcgtcgcggcgaagtgccgcgaacac
cgccagcgtcccaacctcgtcgaggtcgtcgaggggcagaccacctcgcacggtccgttc
gagtgcgagtacttcgcggtcaaccactccatcccggacgcgatcgccgtcgcgatccgc
accgctgcgggcatcgtgctgcacaccggcgacatcaagctcgaccagctgccgctcgac
aaccgtctcaccgacctcgcgggcttctcccgcctcggcgacgagggtgtcgacctgttc
ctcgtcgactcgacgaacgccgaggtccccggcttcgtcacaccggagcgcgagatcggc
ggagtgctcgacaccgtcatcggcaaggccgccaaccgggtgatcgtcgcgtccttcgcg
agccacgtgcaccgcatccagcagatcgtcgacgtcgccgagcgctacaaccggcgtgtg
gcgttcgtcggccggtcgatggtccgcaacatgcagatcgcgcaggatctgggctacctg
aacgtgcccgacggcctcgaggtcgacatcgacaccgccgcgagcctgcccgacgaccgg
gtcgtgctggtctccaccggttcgcagggcgaaccgctctcggcgctgtcccggatggcg
cgcggcgagcaccggcagatcaacatccgggccgacgacctcgtcgtcctcgcgtcgtcg
ctgatccctggcaacgagaactccgtgttcgcggtcgtcaacggcctggccaagcgcggc
gcgaaggtcgtcacccagcagaacgcgaaggtgcacgtctccggtcacgcgtcggccggc
gagctgctgtatctctacaacgcggtgcgacccaccaacgcgatgcccgtccatggcgag
tggcgccacctgcgggcgaacgccgcactggccgaggccacgggtgttccccgcgagcgg
atcgtgctcgcggaggacggtgtggtcgtcgacatggtcgacggactcgcggaaatcgtc
gggcgcgtcccggtcggtcacgtctacgtcgacggcctgtcggtaggcgacgtgggcgag
tccacgctgtccgatcgtctcgtcctcggcgagggtggtttcatctccatctcagtcgcg
gtcgacgccgcgaccggccgtgcggtgagcaccccggaggtctccggtcgcggtttctcc
gacgacccggacgcactcgacgaggcggcgcagctcgtcgacaaggcgctcaacgaactc
gctgccgaaggggtcacggagacccatcgcatcgcccagggcatccgccgggtcgtcggc
cgctgggtcgccgagacctatcgtcgtcgcccgatgatcgtgcccacggtgatcccggtc
tcctga
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