Rhodococcus pyridinivorans TG9: CEJ39_12625
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Entry
CEJ39_12625 CDS
T05830
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
rby
Rhodococcus pyridinivorans TG9
Brite
KEGG Orthology (KO) [BR:
rby00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rby03016
]
CEJ39_12625
Enzymes [BR:
rby01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
CEJ39_12625
Transfer RNA biogenesis [BR:
rby03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
CEJ39_12625
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
AWZ24917
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All DBs
Position
complement(2684781..2686034)
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AA seq
417 aa
AA seq
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MPAQNDEDEQKSTSVTTVPLLEPRDGVPEVVTTARGVADAAAMLAQGHGPLAVDAERASG
YRYSGRAYLVQLRRDGAGTVLLDPIPTRDDLAPLTEVINDLEWVLHSADQDLPGLAELGL
RPAKLYDTELAGRLAGFPRVGLAAIVAETLGLELRKGHGAADWSTRPLPDSWLNYAALDV
EPLVELRDAMARELERQNKTEWAAQEFEHIRLAGPPAPKPDRWRRTSKIHAIKDRRRLAI
VRELWTTRDEIAARRDIAPGRILPDSAIIAAAEANPTSVEQLQELPVFGGPRQRRSSRAW
FNAIERARALPEDRLPPLTPPLTGPPPAGRWSRHHPEEAARLALARGELTALSEEVAVPV
ENLISPELVRRLCWDWDVSDGADVEEYIDGRFAEGGARPWQRALTVPRLAKALTAEN
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgccggcacagaacgacgaggacgagcagaagagcacgagcgtgaccacggtgccgctc
ctcgaaccccgcgacggcgtcccggaggtcgtcaccacggcgcgcggggtcgccgacgcg
gcagcgatgctcgcgcagggacacggcccgctcgccgtcgacgccgaacgcgcatcgggc
taccgctactccgggcgcgcctatctcgtacagctccgtcgtgacggcgccggcacggtg
ctgctcgatcccattcccacgcgggacgacctcgctcccctgaccgaggtgatcaacgac
ctcgaatgggtcctgcattccgccgaccaggatctccccggcctggccgaactcggactc
cgtccggcgaagttgtacgacaccgaactcgccggtcgtctcgccggattcccccgcgtc
ggtctcgccgcgatcgtggccgagaccctcggcctcgaactgcgcaagggccacggtgcg
gcggactggtcgacgcgaccgcttcccgactcgtggctcaactacgccgcgctcgacgtc
gaaccgctcgtggaactccgcgacgcgatggcgcgcgaactcgagcggcagaacaagacc
gagtgggccgctcaggaattcgagcacatccggctcgcggggccgcccgctccgaagccc
gatcggtggcggcgcacgtccaagatccacgcgatcaaggaccgacgccgcctggcgatc
gtccgggaactgtggaccacccgcgacgagatcgccgcccggcgtgacatcgccccgggg
cgcatccttcccgactccgcgatcatcgccgccgcggaggcgaatcccacgagcgtcgaa
cagttgcaggagcttccggttttcggcggtccgcggcagcggcgttcctcccgtgcgtgg
ttcaacgcgatcgagcgggcccgtgcactgccggaggaccgactcccacctctcacgccg
cccctgaccgggcctcccccggccggccggtggtcgcgtcaccaccctgaggaggccgca
cgtctcgccctcgcgcgcggcgaactcaccgctctgagcgaggaagtcgccgttcccgtc
gagaacctgatcagtcccgaactcgttcggcgcctgtgctgggactgggacgtctccgac
ggggccgacgtcgaggagtacatcgacggccgcttcgccgagggcggggcacggccgtgg
cagcgcgcgctgaccgtgccgcgactcgcgaaggccctgacggcggagaactga
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