Rhodococcus pyridinivorans TG9: CEJ39_15590
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Entry
CEJ39_15590 CDS
T05830
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
rby
Rhodococcus pyridinivorans TG9
Pathway
rby03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rby00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CEJ39_15590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rby03400
]
CEJ39_15590
DNA repair and recombination proteins [BR:
rby03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CEJ39_15590
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CEJ39_15590
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
AAA_29
SMC_N
AAA_21
RsgA_GTPase
AAA_16
AAA_25
NACHT
AAA_22
DnaJ_CXXCXGXG
ExoX-like_C
Viral_helicase1
ScfRs
NTPase_1
BCA_ABC_TP_C
cobW
Motif
Other DBs
NCBI-ProteinID:
AWZ25398
LinkDB
All DBs
Position
complement(3315615..3318608)
Genome browser
AA seq
997 aa
AA seq
DB search
MADRLIVRGAREHNLRGVDLDLPRDSLIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSA
YARQFLGQMDKPDVDFIEGLSPAVSIDQKSTNRNPRSTVGTITEVYDYLRLLYARAGTPH
CPVCGEQISRQTPQQIVDQVLEMEAGARFQVLAPVVRTRKGEFVDLFEQLTVQGYSRVRV
DGVVHPLSDPPKLKKQEKHDIEVVVDRLAVKPSAQQRLTDSIETALRLAEGVVVLDFVDR
EEDAPDRERRFSENLACPNAHPLSIDELEPRSFSFNSPYGACPECAGLGVRKEVDPDLVV
PDPDLSLADGAIAPWSMGQSAEYFGRLLSGLADALEFDIDTPWRKLPVKVRKAVLEGSTE
QVHVRYKNRYGRVRSYYAEFEGVMPFLHRRLEQSESEQAKERYEGYMREIPCPACAGARL
RPEILAVTVSAGDFGAMSIAEVSDLSIAECARFLDGLVLGAREAAIAGQVLKEIQARLGF
LLDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLID
TLTRLRDLGNTLIVVEHDEDTVRASDWVVDIGPRAGEHGGTVVHSGTYKELLDNPESLTG
AYLSGREEIEIPALRRPIDKGRQVTVVGARENNLREIDVAFPLGVLTCVTGVSGSGKSTL
VNDILATVMANKLNGARQVPGRHTRINGLDQLDKLVQVDQSPIGRTPRSNPATYTGVFDK
IRSLFASTTEAKVRGYQPGRFSFNVKGGRCEACSGDGTLKIEMNFLPDVYVPCEVCHGAR
YNRETLEVHYKGKTIAEVLDMSIEEAAEFFRPVTSIHRYLNTLAEVGLGYVRLGQPATTL
SGGEAQRVKLAAELQKRSNGRTAYILDEPTTGLHFEDIRKLLGVINGLVDKGNTVIVIEH
NLDVIKTADWIIDMGPEGGSGGGTVVAEGTPEEVVTVEESYTGRFLAEILDGRITAPASA
PVRKRATKATKATATKTAATKSATKAKTAKKKVAAAS
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
gtggcagaccgcctgatcgtgcgtggagcccgggaacacaacctgcgtggtgtcgacctg
gacctgccgcgcgacagtctgatcgtgttcaccgggctgtcgggttcgggcaagtcgagc
ctcgcgttcgacaccatcttcgccgaggggcagcggcgctacgtcgagtcgttgtcggcc
tacgcccgccagttcctcggtcagatggacaagccggacgtcgacttcatcgagggcctg
tcgcctgcggtgtcgatcgaccagaagtccaccaaccgcaacccgcggtccaccgtgggc
accatcaccgaggtctacgactacctgcgtctgctgtacgcccgggccggcactccgcac
tgcccggtctgtggcgagcagatctcccggcagacgccgcagcagatcgtcgaccaggtg
ctggagatggaggccggggcccgtttccaggtcctcgcgcccgtcgtgcgcacccgcaag
ggcgagttcgtcgacctcttcgagcagctgaccgtccagggctactcccgcgtgcgtgtc
gacggggtcgtccacccgctgtccgatccgccgaagctgaagaaacaggagaagcacgac
atcgaggtcgtcgtcgaccgcctcgccgtcaagcccagcgcgcagcagcgactcaccgac
tccatcgagaccgcgctgcggctcgccgagggtgtcgtcgtgctcgacttcgtcgatcgt
gaggaggatgcccccgatcgcgagcgtcggttctccgagaacctggcgtgcccgaacgcg
cacccgctgtcgatcgacgaactcgagccgcggtcgttctccttcaactcgccctacggt
gcgtgccccgagtgtgcgggtctcggtgtgcgcaaggaggtcgatcccgatctcgtcgtg
cccgacccggatctgagcctggccgacggcgcgatcgcgccctggtcgatgggccagagc
gccgaatacttcggccgactgctgtccggcctggccgacgccctcgaattcgacatcgac
accccgtggcggaaactgcccgtcaaggtgcgcaaggccgtgctggagggcagcaccgag
caggtgcacgtgcgctacaagaaccgctacggccgcgtccgttcgtactacgccgagttc
gagggcgtcatgccgttcctgcaccgccgtctcgagcagtccgagtccgagcaggcgaag
gaacgttacgagggctacatgcgggagatcccgtgcccggcctgcgccggtgcccgcctt
cgtcccgagattctggccgtgacggtcagcgcgggcgacttcggtgcgatgtccattgcc
gaggtgagcgacctgtcgatcgccgagtgcgcacgcttcctcgacggtctcgtcctcggc
gcccgcgaggccgccatcgctgggcaggtcctcaaggagatccaggcccggctaggcttc
ctgctcgacgtcggactcgactacctcaccctctcgcgcgccgcgggcaccctctccggt
ggtgaggcacagcgcatccgtctcgccacgcagatcggatccggtctcgtcggcgttctg
tacgtgctcgacgagccgtcgatcggtctgcatcagcgcgacaaccgtcgtctcatcgac
accctcacgcgactgcgcgatctgggcaacacgctcatcgtcgtcgagcacgacgaggac
accgtccgtgcctccgactgggtcgtcgacatcggaccgcgcgcgggcgagcacggcggg
acggtcgtccacagcggcacttacaaggagctgctcgacaacccggaatcgctcaccggc
gcctatctgtccggacgcgaggagatcgagatccccgcgctccggcggccgatcgacaag
ggccggcaggtcacggtcgtcggcgcccgcgagaacaatctgcgcgagatcgacgtggcg
ttcccactcggcgtcctcacctgcgtcaccggtgtctccggctccgggaagtcgacactc
gtcaacgacattctcgcgacggtgatggccaacaagctcaacggcgcgcggcaggttccc
ggacggcacacccgcatcaacggactcgaccagctcgacaagctcgtgcaggtcgaccag
tcgccgatcggccgcaccccgcgctcgaaccccgcgacctacacgggtgtattcgacaag
atccgcagcctgttcgcctccaccaccgaggcgaaggtgcgcggctaccagccgggtcgg
ttctcgttcaacgtcaagggcgggcggtgcgaggcgtgctcgggcgacggcacgttgaag
atcgagatgaacttcctgcccgacgtgtacgtgccgtgcgaggtgtgccacggcgcccgc
tacaaccgcgaaacgctcgaggtgcattacaagggcaagaccatcgccgaggtgctcgac
atgtcgatcgaggaggcggcggagttcttccggccggtcacctccatccaccgctacctc
aacacgctggcggaggtcggtctcggttacgtgcgcctgggccagccggcgacgaccctg
tccggcggtgaggcgcagcgcgtcaagctcgccgccgaactgcagaagcgttccaacggg
cgcaccgcgtacatcctcgacgagcccaccacgggcctgcacttcgaggacatccgcaag
ctgctcggggtcatcaacggtctggtcgacaagggcaacaccgtgatcgtcatcgagcac
aacctcgatgtcatcaagaccgccgactggatcatcgacatgggtcccgagggcggttcc
ggtggcggcacggtggtcgcggagggcactccggaagaggtggtcacggtggaggagagc
tacaccggacgcttccttgcggagatcctcgacgggcggatcactgcacctgcttccgcg
ccggtacgcaagcgcgcgacgaaggcgaccaaggcgaccgcgaccaagactgccgctacg
aagtcggccacgaaggcgaagaccgccaagaagaaggtggcggccgcgagctga
DBGET
integrated database retrieval system
