Aestuarium zhoushanense: B9057_06315
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Entry
B9057_06315 CDS
T05514
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rbz
Aestuarium zhoushanense
Pathway
rbz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B9057_06315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbz03019
]
B9057_06315
03009 Ribosome biogenesis [BR:
rbz03009
]
B9057_06315
Enzymes [BR:
rbz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
B9057_06315
Messenger RNA biogenesis [BR:
rbz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B9057_06315
Ribosome biogenesis [BR:
rbz03009
]
Prokaryotic type
rRNA processing factors
B9057_06315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AUJ65445
LinkDB
All DBs
Position
1264669..1267473
Genome browser
AA seq
934 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGNKVEEFDFESQSKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADREALIAEERAYAESLAAEDEDEDKPKKVNRRRRSR
SKPAAAKSDDLIATKDVDAEPKGMETIDLGEDDDQEGLSPMETVAETPVEEPEDDTAAEA
PVVEEAAETEEAVAEDIQDEAPEVVSEETVEDEADDEDDDADNNIESVANEDDHEDVRPA
RKPRPKRYKIQEVIKVRQILLIQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGIS
RKITNAVDRKKLKEIATEMDVPDGAGLIIRTAGSQRTKAEIKRDYEYLQRLWEQIRELTL
QSTAPAKIYEEGDLIKRTIRDLYSKEIDEVIVAGDAGYRTAKDFMKMIMPSHSKNVKPYN
DQLPLFARYQVEGYLAGMFNPTVQLPSGGYIVIGVTEALVAIDVNSGRATKEGSIEQTAL
KTNLEAADEVARQMRLRDLAGLIVIDFIDMDERKNNTAVEKRLKDKLKTDRARIQVGRIS
GFGLLEMSRQRLRPGMLEATTQPCPHCHGTGLLRSDDNVALSILRQLEEEGVRGRSKEVL
VRAPIAIANYLMNQKREHIAAIEATYGMAVRIECDPTLVSPDFAIEKFKTATRIVPEAAP
VVSASSVVIDDLEDDIEDAEILDEDEADADASDAETAEGEGDGDDKPKKRRRRRRRRKKP
GQGEGEQSSESGDEAEGADADAEGDAPEAEATEAAEAAAEVEAEAPVEVPKPKRTRTRRK
PAAAAEAAEGEATTTEAEVAEAPAEEAPKPKRTRTRKKPAVKAEEGEAVEAAPAEEAEEA
PKPKRAPRARKKPAPKAEAVEAPAEVVAEPVAEATPEAPVEAAIEVAAPAPEPVAAPEPA
PVAEPAPAPAAPAAEVEEPKDDKPKRRGWWSLGR
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaaaatgctcatcgatgccacccacgcggaagaaacccgcgtcgtggtggta
gacggcaacaaagttgaggaattcgactttgaaagtcagtcaaaacgccagcttgctggt
aatatctatctcgcaaaagtaacgcgcgtcgaaccgtcgcttcaggcggctttcgtcgat
tacggtggtaatcggcacggtttccttgcgttctcggagatccatccggattattatcag
atcccggtcgctgaccgtgaagccctgatcgccgaagagcgcgcatatgcggaaagcctc
gctgccgaggacgaagacgaagataagcccaagaaggtcaaccgccgccgtcggtcgcgg
tcgaaacctgctgcggccaagtcggacgatctaatcgcgacaaaggacgttgacgcagaa
cccaaggggatggaaaccattgatctgggtgaggacgacgaccaagagggcctgagcccg
atggaaaccgttgcggaaacccctgtcgaagagcccgaggatgacacggctgctgaggct
cctgttgtcgaagaggctgcagaaaccgaagaggctgtcgctgaggacattcaggacgag
gctcctgaagtggtgtccgaagaaaccgtcgaggacgaagcagacgacgaagacgacgat
gctgataacaacatcgagtccgtagcgaatgaggacgaccacgaagacgttcgccctgcg
cgcaagccgcgtcccaagcgttacaaaatccaagaagtgatcaaggttcgccagatcctc
ttgatccaagttgtaaaagaagaacgcggtaacaaaggtgctgcgctgacgacatatctg
tcgctcgcgggccgttactgtgttctcatgccgaatacggcgcgtggtggtggcatcagc
cgcaagatcaccaatgctgtcgaccgcaaaaagctcaaagaaatcgcgaccgagatggat
gtgccagatggtgcaggcctgatcatccgcactgcgggctctcagcgcacgaaggctgag
atcaagcgtgactacgaatacctgcagcgcctgtgggaacagatccgcgaactgacgctg
caatcgaccgcgccagcaaagatctacgaagaaggcgacctgatcaaacgcacgatccgc
gacctctattccaaagagatcgatgaggtgatcgttgcgggtgatgcgggctaccgcacg
gcaaaagacttcatgaaaatgatcatgccgtcgcattcgaaaaacgtgaaaccctacaac
gaccagctgccgctctttgcgcgttatcaggttgagggttacctcgctggtatgttcaac
ccgaccgttcagttgccgtcaggcggctatatcgtgatcggtgtgacagaggctctggtt
gcgatcgacgtgaactctggccgcgcgaccaaagaagggtcgatcgaacagaccgcgctg
aaaaccaaccttgaagcggcggatgaagttgcgcgtcagatgcgtctgcgcgaccttgct
ggtctgatcgtcatcgactttatcgatatggacgagcgcaaaaacaacactgccgttgaa
aagcgcctcaaggacaaactgaaaaccgaccgcgcccgtatccaagtgggtcgcatctcg
ggctttggtctgttggaaatgtcgcgccagcgtctgcgtccgggtatgctcgaggcgacg
acacagccttgtccgcattgccacggcacaggtctgctgcggtcagatgacaacgtcgct
ctgtcgatcctgcgtcagttggaagaagagggcgttcgtggtcgttccaaagaggttctg
gtccgcgcaccgattgcgattgcaaactatctgatgaaccagaagcgcgaacacatcgct
gcgattgaagccacctacggtatggctgttcgcatcgaatgtgaccccacgctggtttcg
cctgatttcgcgattgagaagttcaagaccgcaacacgcatcgttcccgaggccgcacct
gttgtgtctgcgtcgagtgttgtgatcgacgatcttgaagacgatatcgaagatgcggaa
atcctcgacgaggatgaagcagatgcggacgcttccgatgcagagacagcagagggcgaa
ggtgatggcgatgataagccgaagaaacgccgccgccgtcgtcgtcgtcggaagaagcct
ggtcagggtgagggcgagcagtcgtccgagtctggtgacgaggccgaaggtgctgacgcg
gatgcagagggcgatgcgcccgaggctgaggctaccgaggctgcggaagctgctgctgag
gtcgaggccgaagcgcctgtagaggtaccgaaaccgaaacggacgcgtacgcgccgcaaa
cccgccgctgctgcggaggctgctgaaggtgaggctactacgaccgaggctgaagttgct
gaggctcctgctgaggaagcgccgaaaccgaagcgcactcgcacccgtaagaaacccgct
gtgaaagcagaagagggtgaagcggtagaagcggcacctgcggaagaggcagaggaagcg
ccgaagccgaaacgcgcacctcgtgctcgtaagaaacccgctccaaaggctgaggctgtt
gaagcacctgctgaggtggtcgctgaacctgttgcagaggcgacgcctgaggcacctgtt
gaagcagcgattgaggtagcagcacctgcgcctgaaccagtggcagctcctgaacctgct
ccggtggcggaaccagcgcccgcgcctgctgctccagcggctgaggtcgaagagccgaaa
gacgataaacccaaacgccgcggttggtggtcactgggtcgctaa
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