Aestuarium zhoushanense: B9057_07165
Help
Entry
B9057_07165 CDS
T05514
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rbz
Aestuarium zhoushanense
Pathway
rbz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rbz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B9057_07165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rbz03400
]
B9057_07165
Enzymes [BR:
rbz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B9057_07165
DNA repair and recombination proteins [BR:
rbz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B9057_07165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
AAA_16
UB2H
AAA_30
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AUJ64100
LinkDB
All DBs
Position
complement(1435716..1439168)
Genome browser
AA seq
1150 aa
AA seq
DB search
MKSQSHITVCGAPEGFDAKLILDEVGKSGAPVLHIARDDRRLTEMQAALAFYAPEMPVVV
FPAWDCLPYDRVSPNADICAARMATLAALAHGMPKQFVLLTTLNAATQRVPARGLLKEAS
FTARVNSRIDEAALKQYLVRMGFTQSPTVMEPGDYAVRGGIIDIFPPGEAGPVRLDLFGD
VLDSARRFDPASQRTTEKLDVVELAPVSEVILDEAAITRFRQNYRIEFGAAGTDDPLYEA
ISAGRKHAGAEHWLGFFHDHLETLFDYVPTATVTIDDQVTPTRLARWTMIEDAYDTRMFA
LKQKGRMDSVYKPAPPALMYMDDPTWEAVIADRRVLQFTPLKQSTGLGVIDAGGRIGRDF
APERQQENVNLFKALMLHVKARASEGPVVVASYSEGARERLMGLLEDEGAGEVIPVQNFS
RVGKSGLHLAIWPLEKGFETKGLTVISEQDVLGDRLIRQTKKKRKAENFLTETQSLTPGD
LVVHVDHGVGRYKGLEVVQALGAAHECILLEYAEGSKLYLPVENIELLSKFGHEDGLLDR
LGGGAWQAKKARMKERIRQMAERLIRVAAERELRKAPVLSPPDGMWDQFLARFPYAETED
QLQAISDVLEDLDSGRPMDRLICGDVGFGKTEVAIRAAFVAAMSGVQVAVIAPTTLLARQ
HYKNFAERFRGFPINVAPLSRFVSAGNAAKTREGMANGQVDIVVGTHALLAKGVKFNNIG
LLIIDEEQHFGVQHKERLKQLRSDIHVLTLTATPIPRTLQLSLSGVRDLSIIGTPPIDRL
AIRTYVSEFDTITIREALLREHYRGGQSFFVVPRLSDLPEMEDWLKREVPEVSFVVAHGQ
MAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMIVHRADMFGLAQLYQIRGRVG
RSKTRAYAYLTTKPRAKLTPQAEKRLRVLGSLDTLGAGFTLASQDLDIRGAGNLLGEEQS
GHINEVGYELYQQMLEDEIARIKSGAIGLSDDNGQWAPQINLGVSVLIPETYVADLDVRL
GLYRRLSALTKKVELEGFAAELIDRFGPLPKEVNTLMLIVRIKAMCKRAGISQLDGGPKG
ATIRFHNDKFASPKGLVEFIQAQKGMAKVKDNKIVVGREWKTEADKIKGAFAIAKDLAEK
VAEEKKSKQA
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcacaatcccacattaccgtttgcggcgcccccgaagggtttgacgcgaaattg
atccttgatgaagtcggaaaatctggcgctcccgtgctccacatcgcgcgggacgatcgg
cgattgaccgaaatgcaagcggccttggcgttttacgcgcccgagatgcctgtagtcgtg
tttcctgcgtgggattgtttgccatacgaccgtgtatctccgaacgctgatatttgtgcg
gcccgtatggcgaccttggcggcattggcccatgggatgccaaagcagttcgttctgctg
acgacgctcaatgcagcgacacaacgtgtccctgcgcgggggctgctaaaagaggcgtcc
tttacggcgcgggtgaatagccgcatcgatgaggctgcgttaaaacagtatttggtccgc
atggggtttacccaatcaccgactgtgatggagcctggcgattatgcggttcggggcggg
atcatcgatatcttccctccgggtgaagcggggccagtgcgactggacctctttggtgac
gttctcgacagtgcgcggcggtttgatccagcgagccagaggacaacggaaaagctcgat
gtggtggaactcgcgcccgtttccgaggtgatcctcgatgaggcggcgatcacgcgtttt
cgtcagaactatcgtatcgaatttggcgcggctggcactgacgatccgctgtatgaggcg
atcagtgcggggcgcaaacatgcgggcgcggaacattggctcgggttcttccatgaccac
cttgagacgttgtttgactacgtcccaaccgcaacggtgacgattgacgatcaggtcacg
ccaacgcggctcgcccgatggacgatgatcgaagacgcctatgacacgcggatgtttgcc
ctgaaacaaaaggggcggatggacagcgtttataagccagcgccgcccgccttgatgtat
atggacgatcccacatgggaggccgtcatcgcggatcgtcgcgtgctgcaatttacgccg
ctcaaacaatcgactggtctgggtgtgatcgacgcaggcggtcgcattggtcgcgatttc
gcacctgagcgccagcaggaaaacgtaaaccttttcaaagctctgatgctgcacgttaag
gcacgggcgtctgaagggcctgtagttgtagcatcctattccgagggtgcgcgtgaacgt
ctgatggggctcttggaggatgagggcgctggtgaagtgatccccgtgcagaacttctct
cgcgttgggaaatcaggtctacacctcgccatatggccccttgaaaaaggatttgaaacc
aaaggccttacggtcatttctgaacaggatgttctaggcgatcgtcttattcggcagacc
aagaaaaagcgtaaagccgagaatttcctgaccgaaacgcagagcctcacacccggtgat
cttgtcgtacacgttgatcacggtgtcggacgatacaagggccttgaggtcgttcaagct
ttgggcgccgcgcatgagtgtattcttctggaatatgccgaaggatcgaagctgtacctg
cctgttgagaatatcgaactgctgtccaaattcgggcacgaagatggtcttttagatcgt
ctgggcggtggtgcatggcaggcgaagaaagcccgcatgaaagagcgtattcgccagatg
gcggaacgtttgatccgcgtagcggccgaacgtgagttgcgcaaagcgcctgttctgtca
ccacccgatggcatgtgggatcagttccttgcacgtttcccctatgcggaaaccgaggat
cagcttcaggcaatttccgacgtacttgaggatctagattcaggtcgtccgatggatcgt
ctcatctgtggcgacgtgggctttggcaagaccgaggttgcaatccgcgccgcctttgtt
gcggcgatgtcgggtgttcaggtggcggtgattgcgccgacgacattgcttgcgcgtcag
cactataagaacttcgccgaacggttccgtggcttcccaatcaacgtagcgcctctgtcg
cggtttgtcagtgctgggaatgcggcgaaaactcgtgagggcatggcgaacgggcaggtc
gatattgttgtcggaacccatgcgctgctggcgaaaggcgtgaaattcaacaacattggc
ttgctgatcatcgacgaagagcagcactttggtgtgcagcataaagaacgtctgaaacaa
ttgcgctctgatattcacgttctcacgctgaccgcgacgccgatcccacggacgctgcaa
ttgtcgctctctggggtgcgcgatttgtcgatcatcggcacgccacccatcgaccgtttg
gcgatccgaacctatgtcagcgaattcgacaccattacgatccgcgaggcgctcttgcgc
gagcattatcgtggtggccagtcgttctttgttgtgccgcgtttgtctgatctgcccgag
atggaggattggctcaaacgcgaggtgcccgaagtgtcgttcgttgtggcacatggtcag
atggcggcaggtgagctcgatgatcgtatgaacgcgttctacgacgggaaatacgacgtg
cttttggcaacaacgattgtcgagagcggtttggatattccgacggcgaacacgatgatt
gtgcaccgtgctgatatgtttggtcttgcgcagctctatcaaatccgagggcgtgtcggt
cgatcgaagacccgcgcctatgcctatctgacgactaagccgcgtgcgaaactgacgcct
caggccgaaaagcgtcttcgagtgttggggagccttgatacccttggggctggatttacc
cttgcgtctcaagaccttgatatccgtggtgcaggtaacctcctcggtgaggagcagtcg
ggccacatcaatgaggtcgggtacgagttgtaccagcaaatgctggaagacgagattgcg
cggatcaagtctggcgcgattggtctgtcggacgacaacggacagtgggcaccgcagatc
aaccttggcgtttctgtattgatcccagagacttatgtggctgatcttgatgtgcgtttg
ggcctctatcgtcgcttgtctgccttgacgaaaaaggtcgaactcgaagggttcgcggct
gaactgatcgaccgtttcggtccgttgccgaaagaggtgaacaccctgatgctcatcgtg
cggatcaaggcgatgtgtaaacgcgcgggtatcagccagcttgacggtggacctaagggt
gctaccattcggttccacaacgataaattcgcatcacctaaagggttggtcgaatttatt
caggcgcaaaaaggcatggcgaaggtcaaagacaacaagatcgtcgttggccgcgagtgg
aaaactgaagcagacaagatcaaaggggcctttgcgattgccaaagaccttgctgaaaaa
gttgctgaagagaagaaaagcaagcaggcgtaa
DBGET
integrated database retrieval system
