Aestuarium zhoushanense: B9057_11055
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Entry
B9057_11055 CDS
T05514
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rbz
Aestuarium zhoushanense
Pathway
rbz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B9057_11055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbz03019
]
B9057_11055
Enzymes [BR:
rbz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B9057_11055
Messenger RNA biogenesis [BR:
rbz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B9057_11055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_RecD
Utp25_C
HEM4
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AUJ64806
LinkDB
All DBs
Position
complement(2226655..2227989)
Genome browser
AA seq
444 aa
AA seq
DB search
MDFDMLGLAPRLVTKLAELGITDPTPIQAQAIPHAMNGRDVMGLAQTGTGKTAAFGLPML
DALMKNGEKPSPKTTRALILAPTRELAKQIADSLSAFSSGSHLKTVLVVGGAGITGQSRR
LEKGTSILVATPGRLLDLIDRGAVRLDETQFLVLDEADQMLDLGFIHALRKIATLIPKER
QTMLFSATMPKQMAELAESYLSNPIRVQVNAPGQAAEKIEQCIHFVAKAAKTDLLVELLD
GHRDELALVFGRTKHGMEKLSRVLENKGFAVAAIHGNKSQGQRDRAIKDFKEGKVRVLVA
TDVAARGIDIPGVRHVYNYELPNVPDQYVHRIGRTARAGADGCAVAFCAPDEMSDLRDIE
KTLKTTIPVASGRPWEVLGNEPKRKPAGNGRGGPRRFGNKGSGGAGKPKGDRSFGKPAGD
RPSFAKPAGGGQRRRKPQGNRAAG
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggacttcgatatgctggggctcgccccccgccttgtgactaaacttgccgaacttggc
atcactgacccgaccccgatccaagcgcaggcgatcccgcacgcgatgaacggtcgcgac
gttatgggccttgcccaaacgggcacgggtaaaaccgctgctttcggtctgccgatgctc
gatgcgctgatgaaaaacggtgaaaagccttcgccgaaaaccacgcgtgcgctgatcctc
gcgccgacccgtgagcttgcgaaacagattgcggatagcttgtctgcgttttcttctggc
tcgcacctcaagaccgttctggtcgtcggtggcgcagggatcacgggccaaagccgccgt
ctcgagaaaggtacctcgatcctcgttgcgacccccggtcgtttgctcgacctgatcgac
cgtggtgctgtgcgccttgatgagacgcagttcctcgtgttggacgaggctgaccagatg
ctcgacctcggtttcattcacgcgctgcgcaaaatcgcaacgctgatccccaaagagcgt
cagaccatgctgttctcggcgaccatgccgaagcagatggctgaattggccgaaagctac
ttgtccaacccgatccgcgttcaggtgaacgctccgggtcaggcggccgagaaaatcgaa
caatgcatccactttgttgcgaaggccgcaaagacggacctgttggttgaactgctcgac
ggacaccgcgacgaactggcgctagtgtttggccgtaccaagcacgggatggagaaactg
tcgcgcgttctcgaaaacaagggctttgccgttgctgcgatccatgggaacaaatcccaa
ggtcagcgtgaccgcgcgatcaaagacttcaaagagggcaaggtgcgcgttctcgtggca
actgacgttgcggcccgtggcatcgacattccgggcgtgcgccacgtgtataactacgag
ctgccgaacgtgcctgatcaatacgtccaccgtattggccgtaccgcgcgcgcaggtgcg
gacggttgcgccgttgcgttctgtgcacctgacgaaatgtcggatctgcgcgacattgaa
aagacgctcaaaacgacgatcccagtggcatctggccgtccgtgggaagtcctcggcaac
gagccgaaacgcaaacctgctggcaatggccgtggtggtccgcgtcgctttggcaacaaa
ggcagcggtggtgctggcaaacccaaaggggatcgttccttcggtaagcccgctggcgat
cgtccgtcgtttgctaaaccagcagggggcggccagcgtcgccgtaagccccaaggcaat
cgcgccgcaggataa
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