Aestuarium zhoushanense: B9057_12895
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Entry
B9057_12895 CDS
T05514
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rbz
Aestuarium zhoushanense
Pathway
rbz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rbz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B9057_12895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rbz03019
]
B9057_12895
03400 DNA repair and recombination proteins [BR:
rbz03400
]
B9057_12895
Enzymes [BR:
rbz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B9057_12895
Messenger RNA biogenesis [BR:
rbz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B9057_12895
DNA repair and recombination proteins [BR:
rbz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
B9057_12895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
Cas3-like_C_2
Rhodanese
Motif
Other DBs
NCBI-ProteinID:
AUJ65128
LinkDB
All DBs
Position
complement(2585853..2587889)
Genome browser
AA seq
678 aa
AA seq
DB search
MTAATLLRDVFGFDGFRPGQEEIVEAVSLGQNTLAIMPTGGGKSLCFQLPALVREGVTVV
ISPLIALMRDQVRGLREAGVEAGALTSGNTQEETDAVWQALEEGRLKLLYMAPERLAAGG
VPQMLRRIGVSMIAVDEAHCVSQWGHDFRPDYLRIGELRRALDVPLAAFTATADAETQAE
IVEKLFDGVPPVTFLRGFDRPNIHLAFAVKDQPRQQILSFAAARKGQSGIVYCGTRAKTE
TIAQALREAGHAACHYHGGMEAEDRRVVEGRFQQEDGLIVVATVAFGMGIDKPDIRWVAH
ADLPKSIESYYQEIGRAGRDGAPAETLTLFGPDDIRYRRQQIDEGLAPPERRMADHARLN
ALLGLCEALECRRKTLLGYFGEEATACGHCDLCDKPADVFDGTTPVRMALSAALRTGESY
GSGHLIEILLGSDLDKIKQRGHDQLPTYGVGKEYSRREWQAIFRQMMGHDLLRPDPERHG
GLRMTEKARPILRGEDTIQLRRDTIKAAKTGNKIKMLVSEDDAPLLSALKAKRRALAEAA
GVPAYIIYNDSTLIEMAQKRPMSLDEMAKISGVGAKKLQSYGDAFLSVIAGEVAQLHPAR
RKMAGRSEGSVYDRLLEVQADLSRGEDGTGKPMTCSASLLAKVAQMRPRDMATMERVLGA
KYAERFGDAFLGVLSEAS
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcagccacgcttttgcgcgacgtattcggattcgacgggttccgtccgggtcaa
gaagagattgttgaggcggtgtctctggggcaaaacacgcttgccattatgccgacaggc
ggcggtaagtcgttgtgcttccaacttccagccttggtgcgcgagggtgtaaccgtcgtt
atttcgccacttattgccttgatgcgtgatcaggtgcgagggctacgtgaagctggggtt
gaggctggcgcgctgacctctggcaatactcaagaagaaaccgatgccgtttggcaggcg
ctggaagaggggcgtctcaagctcttgtatatggcgccagagcggttggccgcgggcggt
gtaccgcaaatgttgcgtcgcattggcgtgagcatgattgcggtcgatgaagcgcattgt
gtcagccagtggggccacgattttcgcccagactatttacggattggcgaattgcggcgg
gcgttggacgtgccacttgcggcttttaccgcgacggctgacgcggagactcaagcggaa
atcgttgaaaagctgtttgatggcgttccccccgttacgttcctgcgtggatttgatcgt
ccgaatatccacctcgcctttgccgtgaaggatcagccgcgccagcagatattgtcgttc
gcggcggcgcgaaaagggcagtctgggattgtctattgcggcacgcgagccaaaacggaa
accatcgctcaagcgttgcgagaggcgggacatgccgcctgtcattatcacggcgggatg
gaggcggaagaccgtcgcgttgttgaggggcgcttccaacaagaagacggactgatcgtg
gttgcgacggtcgcttttggtatgggtatcgacaagccagacatccgttgggttgcccat
gcagacctgccgaaatcgattgagtcttactaccaagagatcggtcgcgcaggtcgtgac
ggagcaccggctgagacactcacgctctttggacccgatgacattcgttaccgtcgtcag
caaatcgatgagggtcttgcgccgccggaacgtcgtatggctgatcacgcgcgtctcaat
gcgcttttgggattgtgcgaggcgcttgaatgccgtcgcaaaaccctgctcggctatttt
ggcgaagaggcgacggcctgcggtcattgcgatctttgcgacaagcctgccgatgtgttc
gatggaacaacgcctgtgcggatggcgctgtctgcggctttgcggacaggggaaagctat
ggatccgggcatctgatcgagatcttgttgggctctgatctggataagatcaaacagcgc
ggacacgatcagttgccgacctatggtgtcggcaaagaatatagtcgccgtgaatggcag
gcgatttttcggcagatgatggggcatgatttgttgcgtcctgatcctgaacggcatggt
ggtttgcgcatgaccgaaaaagcgcgacccattctacgtggtgaggatacgatccagctg
cggcgcgatacgattaaggccgcgaagactggcaataagatcaaaatgctggtgagcgag
gacgacgcgccgctgttgtccgcactcaaggcgaaacgccgtgcactggcggaggcggcg
ggtgtgcctgcgtatatcatctacaacgacagcactctgatcgaaatggcgcagaagcgc
ccgatgagcttagacgagatggcaaagatcagcggtgtaggagcaaagaaactgcagagc
tacggtgatgcgtttctttcggtgattgcaggtgaggtggcacaacttcaccccgcgcgt
cgcaagatggcggggcgcagtgaaggttcggtttatgatcgactactcgaagttcaggcc
gacctcagtcgaggcgaagatggcactggtaaaccgatgacctgctcagcttctctgttg
gcgaaagtcgcgcaaatgcgccctcgggatatggcgacgatggagcgtgtgctcggcgcg
aaatatgccgaacggttcggggatgcattcttgggcgttttgtcagaagcatcctga
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